PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna26211.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family TCP
Protein Properties Length: 452aa    MW: 50831.2 Da    PI: 6.9661
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna26211.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP1271.9e-391703173134
                      TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.....ssssaseceaesssssas 83 
                               kkdrhski T++g+RdRR+Rls+++a+ fF Lqd+LGfdk+skt+ WLl++a p+i +  +      ++ss s+c   + +s ++
  mrna26211.1-v1.0-hybrid 170 CKKDRHSKIRTARGLRDRRMRLSLDVARNFFGLQDMLGFDKASKTVAWLLNKAGPEIGKVREMsgqneNQSSVSDC---EVVSGTD 252
                              69********************************************************999995444322222444...3333333 PP

                      TCP  84 nsssg............kaaksaa..kskksqksaasalnlakesrakarararertrekmrikn 134
                              +   +            ++++++    + +++k++a ++ lak sr karara+ertrekm  ++
  mrna26211.1-v1.0-hybrid 253 EAATDeiidkisrkpssSSCANNRikRTVRQPKKSAFFNPLAKASRVKARARAKERTREKMERRQ 317
                              2222244466667777644444444345566666666788899******************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036343.6E-40171315IPR005333Transcription factor, TCP
PROSITE profilePS5136930.834171229IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137011.055295312IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:2000032Biological Processregulation of secondary shoot formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 452 aa     Download sequence    Send to blast
MFPYSSNVFS TGTTGNYSYY EPAAFAHDQP FSIQGRPFLN DLTINPNCNF ASVVSGSKQD  60
QDLLENTHHH MHPPLSFVYF PSPLEDDDVL LHHHHHHELL SLHENTLSAS HHHHHQTGTP  120
LTAMVEWDSN KDDQLLIMSK EGEQQQQQQQ QQQQQQQQQQ ILIPTARRSC KKDRHSKIRT  180
ARGLRDRRMR LSLDVARNFF GLQDMLGFDK ASKTVAWLLN KAGPEIGKVR EMSGQNENQS  240
SVSDCEVVSG TDEAATDEII DKISRKPSSS SCANNRIKRT VRQPKKSAFF NPLAKASRVK  300
ARARAKERTR EKMERRQPKP CDDVDQAKKM ELDLSQLSSW STFQTGEESG GTQSHNNLNN  360
QSSLEVLAEE EPMSNFQAAG AAGVVHQDLI EIDGHDAAAN LVTMGKWSSS SIFHSLQNTS  420
ASISQEQHQF ANSQFYGKPW EVYNSSTHNG F*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna26211.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF5308031e-162KF530803.1 Rosa hybrid cultivar BRC1 protein (BRC1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004301078.10.0PREDICTED: transcription factor DICHOTOMA
TrEMBLA0A1Q1NA260.0A0A1Q1NA26_FRAVE; PCF transcription factor 9
STRINGXP_004301078.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65642851
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18550.23e-25TCP family protein