PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna26208.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family C2H2
Protein Properties Length: 461aa    MW: 52282.2 Da    PI: 4.9139
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna26208.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.30.00053161177117
                              EEETTTTEEESSHHHHH CS
                  zf-C2H2   1 ykCpdCgksFsrksnLk 17 
                              y+Cp+Cgk+++  + L+
  mrna26208.1-v1.0-hybrid 161 YVCPNCGKRYNALDALQ 177
                              9**********999886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5134429.386138IPR017919Transcription factor TFE/TFIIEalpha HTH domain
SMARTSM005312.1E-6538209IPR002853Transcription initiation factor IIE subunit alpha, N-terminal
PfamPF020024.2E-64093IPR024550TFIIEalpha/SarR/Rpc3 HTH domain
SuperFamilySSF467855.97E-641126IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.109.9E-542101IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF577831.28E-9147202No hitNo description
Gene3DG3DSA:3.30.40.101.8E-20147206IPR013083Zinc finger, RING/FYVE/PHD-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006367Biological Processtranscription initiation from RNA polymerase II promoter
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 461 aa     Download sequence    Send to blast
MSIEPFNRLV KLTARAFYDD LPTKGDNQPK TGRSDNRGLA VVVLDALSRR QWVREEDLAK  60
DLKLHSKQLR RTLRFFEEEK LVTRDHRKET AKGAKIFSAA VAATADGQQH TKEGEEKIKL  120
HTHSYCCLDY AQIYDVVRYR LHRMRKKLKD ELEDKNTVQE YVCPNCGKRY NALDALQLLS  180
LEDEYFHCES CNGELVAESD KLASQEVGDG DSNARRQRRE KLRDMLQNME VQLKPLMEQI  240
NRVKDLPPPE FGTLQAWEAR AHAQRRAENG ESSGDPSKSS HGYGGTPMPF LGDTKVILVS  300
KLPVVEVDFD NEGKGNDVKS ESDTTGQKVL PPWMIKQGMN LTKEQRGEVK QEAKMDGTVA  360
APEYSDDKKA NAEDNEKAFQ DEYLKAYYAA IMKRQEEESA KSRQVGMKSK RDPNEGDEAE  420
ENIWEEAPVA GDANGNYKVN DLNVEADATA EDEDDIDWEE *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fyw_W4e-12929612244TRANSCRIPTION INITIATION FACTOR IIE SUBUNIT ALPHA
5fz5_W4e-12929612244TRANSCRIPTION INITIATION FACTOR IIE SUBUNIT ALPHA
5sva_h4e-12929612244Transcription initiation factor IIE subunit alpha
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna26208.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004299240.10.0PREDICTED: general transcription factor IIE subunit 1-like
TrEMBLA0A2P6P3F90.0A0A2P6P3F9_ROSCH; Putative transcription initiation factor IIE subunit alpha, TFIIEalpha/SarR/Rpc3 HTH
STRINGXP_004299240.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2430811