PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna26188.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | NF-YB | ||||||||
Protein Properties | Length: 467aa MW: 52106.4 Da PI: 8.2889 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 63.4 | 4.7e-20 | 2 | 73 | 14 | 85 |
NF-YB 14 srimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkv 85 ++i+k++lP + ++++da++++ ec +efi +++se+++ c re+++ti+++ +l al lGf +y+e++ + mrna26188.1-v1.0-hybrid 2 TKIIKEMLPPDVRVARDAQDLLIECCVEFINLISSESNEVCSREEKRTIAPEHVLKALQVLGFSEYIEEVYA 73 68******************************************************************9865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 2.1E-28 | 2 | 122 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 5.1E-32 | 2 | 120 | IPR009072 | Histone-fold |
Pfam | PF00808 | 2.5E-17 | 2 | 59 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Pfam | PF04759 | 4.1E-68 | 293 | 465 | IPR006460 | Protein of unknown function DUF617, plant |
TIGRFAMs | TIGR01570 | 4.4E-61 | 293 | 466 | IPR006460 | Protein of unknown function DUF617, plant |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 467 aa Download sequence Send to blast |
MTKIIKEMLP PDVRVARDAQ DLLIECCVEF INLISSESNE VCSREEKRTI APEHVLKALQ 60 VLGFSEYIEE VYAAYEQHKI ETVHDVAKSV KWGNGAEMTE EQALAEQQRM FAEARARMNG 120 GATAPKQPDP DQRFSWGSSA RNKERINVET PHHHLSLNKR EETKLLSLSL LVFTLYSTPT 180 FFNNTASLPF IAFLSYATTP TPMAKSLQDS SSKRHFHWTN KVGNEDDHGH DDHALPSLPK 240 AVSDEEKRKD TPHKAIQLQR RKLQAAAISR LRSVLTAFGK NRGGLPLGLG SRVVGTLFGS 300 KKGHVHFALQ RDPNSHPAFL IELATPISGL VKEMASGLVR IALECDKEKE DQEKKKTMES 360 KSSKSGSAVR RLLEEPVWRT YCNGKKSGFA SRRECGPKEW KVLKAVEPIS MGAGVLPCGD 420 EGEDGELMYM RAKFERVVGS RDSEAFYMMN PDSNGAPELS IYLLRV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1jfi_B | 3e-26 | 1 | 115 | 21 | 133 | Transcription Regulator NC2 beta chain |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna26188.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004299248.1 | 0.0 | PREDICTED: protein MIZU-KUSSEI 1 | ||||
TrEMBL | A0A498I5A8 | 0.0 | A0A498I5A8_MALDO; Uncharacterized protein | ||||
STRING | XP_004299248.1 | 0.0 | (Fragaria vesca) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G23090.2 | 3e-75 | nuclear factor Y, subunit B13 |
Link Out ? help Back to Top | |
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Phytozome | mrna26188.1-v1.0-hybrid |