PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna26182.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family ERF
Protein Properties Length: 217aa    MW: 24058.9 Da    PI: 8.7189
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna26182.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2521.8e-164290355
                      AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                             + GVr+++ +grWvAeI+d s+   + r +lg+f+ aeeAa a+++a++ l+g
  mrna26182.1-v1.0-hybrid 42 FLGVRQRP-SGRWVAEIKDSSQ---NLRLWLGTFDRAEEAALAYDKAARVLRG 90
                             67******.7*********543...5***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.108.9E-2841100IPR001471AP2/ERF domain
SMARTSM003802.0E-3241104IPR001471AP2/ERF domain
PROSITE profilePS5103219.9414198IPR001471AP2/ERF domain
CDDcd000186.66E-3041100No hitNo description
PRINTSPR003676.0E-74253IPR001471AP2/ERF domain
SuperFamilySSF541712.29E-1942100IPR016177DNA-binding domain
PfamPF008472.2E-104490IPR001471AP2/ERF domain
PRINTSPR003676.0E-76480IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MDSLESSTPN QKETFHENKE SSCLSTSVIK VPKKAKINGR RFLGVRQRPS GRWVAEIKDS  60
SQNLRLWLGT FDRAEEAALA YDKAARVLRG RNAKTNFPSS HQQHGMDFMN IHEENCNILR  120
KNPRLYQLLQ HAIMKNHAAI SRSSSSSRII GSKEAQSDSN DKYFDTLVEE TIVCSSSSTS  180
TACDVGDYDD YHCALPFGTS KVYSSVVVAP SFSATS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-173998363ATERF1
3gcc_A5e-173998363ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna26182.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004299253.11e-162PREDICTED: ethylene-responsive transcription factor RAP2-11-like
TrEMBLA0A3S8T9291e-161A0A3S8T929_FRAAN; Transcription factor ERF43
STRINGXP_004299253.11e-162(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF123492734
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.11e-18related to AP2 11