PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

mrna26148.1-v1.0-hybrid

Organism

Fragaria vesca

Taxonomic ID

57918

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

bZIP

Protein Properties

Length: 115aa MW: 13507.3 Da PI: 9.4864

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
mrna26148.1-v1.0-hybrid	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	41.7	2.5e-13	34	92	5	63
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 +r +r+++NRe+ArrsR RKk++i+eL+ +v++L N +L ++l +l + ++ +e+ mrna26148.1-v1.0-hybrid 34 RRLKRLISNRESARRSRMRKKKQIQELKHEVDQLYVANNQLYEKLIRLLEVNQRILQEN 92 789********************************************999998888876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	6.8E-9	30	94	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.473	32	95	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	3.3E-12	34	92	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	3.73E-11	34	83	No hit	No description
Gene3D	G3DSA:1.20.5.170	6.1E-11	34	102	No hit	No description
CDD	cd14702	1.25E-11	35	83	No hit	No description
PROSITE pattern	PS00036	0	37	52	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 115 aa Download sequence Send to blast
MSHFNDISPY TYTVSTNTVF DETAAAEQSL NHERRLKRLI SNRESARRSR MRKKKQIQEL 60 KHEVDQLYVA NNQLYEKLIR LLEVNQRILQ ENAELKERVS SLQVTFTDLI DVTL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	mrna26148.1-v1.0-hybrid

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004301090.1	2e-77	PREDICTED: basic leucine zipper 43
TrEMBL	M5WVR4	4e-44	M5WVR4_PRUPE; Uncharacterized protein
STRING	XP_004301090.1	7e-77	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF13044	24	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60830.1	1e-27	basic leucine-zipper 70

Link Out ? help Back to Top
Phytozome	mrna26148.1-v1.0-hybrid