PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna26135.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | Dof | ||||||||
Protein Properties | Length: 315aa MW: 34097.4 Da PI: 7.8385 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 123.2 | 8.7e-39 | 30 | 89 | 2 | 61 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +++alkcprCds ntkfCyynny+lsqPr+fCk+CrryWtkGG lrnvPvGgg+rk k+s mrna26135.1-v1.0-hybrid 30 NHQALKCPRCDSLNTKFCYYNNYNLSQPRHFCKSCRRYWTKGGVLRNVPVGGGCRKAKRS 89 57899****************************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 1.0E-27 | 24 | 83 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 1.9E-33 | 32 | 88 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.506 | 34 | 88 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 36 | 72 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 315 aa Download sequence Send to blast |
MQDIQSSFGG RFFGGAGAGD RRLRPHHNQN HQALKCPRCD SLNTKFCYYN NYNLSQPRHF 60 CKSCRRYWTK GGVLRNVPVG GGCRKAKRSK PKSSSSSPAS PPQPNSERRA TSNSSSESSS 120 LTNTTATATE AVSAPSSTSS ASNLLNIPDS KFFVSQSGAN ASFETTTTAT MLEQSAATEI 180 GMFSDMVTFT SLITASNDVP FGFTNINNIS VPPFRVNQPG HQQQQVEQSQ WEQQQNSQEM 240 KLPELTGGML DQTTAQVDLS VFQTKANGGG GGFGSLDWQP AGDQGLFDLP NTVDHAYWSQ 300 GQWTDQDPPS LYIP* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00570 | DAP | Transfer from AT5G60850 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna26135.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004299274.1 | 0.0 | PREDICTED: dof zinc finger protein DOF5.4 | ||||
TrEMBL | M5WA03 | 1e-114 | M5WA03_PRUPE; Uncharacterized protein | ||||
STRING | XP_004299274.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5998 | 30 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60850.1 | 2e-34 | OBF binding protein 4 |
Link Out ? help Back to Top | |
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Phytozome | mrna26135.1-v1.0-hybrid |