PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna26101.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | TCP | ||||||||
Protein Properties | Length: 377aa MW: 41441.1 Da PI: 9.0287 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 89.3 | 8.4e-28 | 60 | 170 | 3 | 89 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..........ssssaseceaess 78 g+kdrhsk++T +g+RdRR+Rls+++a++++dLqd+LG+ ++sk i+WLl+ i +l+ + ++s+a mrna26101.1-v1.0-hybrid 60 GGKDRHSKVSTVRGLRDRRIRLSVPTAIQLYDLQDRLGLSQPSKVIDWLLEVTDDDIEKLPPLqllphhgllnTTSTA-------- 137 78*************************************************************544444444322222........ PP TCP 79 sssasnsssg......................k 89 + + ++++++ + mrna26101.1-v1.0-hybrid 138 HHQFHHQQQQilnpvnvpffdvnrrlteqvvlD 170 111111111123344455555555555555442 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 8.1E-26 | 61 | 140 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 26.839 | 61 | 119 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045962 | Biological Process | positive regulation of development, heterochronic |
Sequence ? help Back to Top |
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Protein Sequence Length: 377 aa Download sequence Send to blast |
MMTDPRGKGF QAKQEGQNNN NNDGNTMSSY NKAASSSTTT SRQWSGFRNP RIVRVSRTFG 60 GKDRHSKVST VRGLRDRRIR LSVPTAIQLY DLQDRLGLSQ PSKVIDWLLE VTDDDIEKLP 120 PLQLLPHHGL LNTTSTAHHQ FHHQQQQILN PVNVPFFDVN RRLTEQVVLD ESKGKSIKDH 180 DDQALAQKLF PIGNMPSSIP GLLNNAMAYN NYFQNHNSEP SCLSLSQFGS SSHGFPLAPQ 240 MDHMMSSNNG LSFSNTSMPM ASGSQLFFCP STATPVPSLF GPYAPYITAT TPVGENSSTS 300 NDQQPALRQT SNHMIQLLSS GNTTSQNFAP NNVLMPSLQY SIGSSLRSFP TLDNLKLHSQ 360 NHNASSSQPN KDDTGS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 1e-18 | 66 | 120 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 1e-18 | 66 | 120 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00065 | PBM | Transfer from AT5G60970 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna26101.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004301109.2 | 0.0 | PREDICTED: transcription factor TCP5 | ||||
Refseq | XP_011464305.1 | 0.0 | PREDICTED: transcription factor TCP5 | ||||
TrEMBL | A0A2P6P333 | 0.0 | A0A2P6P333_ROSCH; Putative transcription factor TCP family | ||||
STRING | XP_004301109.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF932 | 34 | 119 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60970.1 | 5e-42 | TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5 |
Link Out ? help Back to Top | |
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Phytozome | mrna26101.1-v1.0-hybrid |