PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna26080.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family B3
Protein Properties Length: 516aa    MW: 59387.7 Da    PI: 6.9188
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna26080.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B338.71.7e-12491271499
                              T-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                       B3  14 grlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                              ++  +p +f++++ g+++++    +l+ +  r+W v +  +   +++++++GW+ F ++ngLk g  +vF++ g+s f  +v +f 
  mrna26080.1-v1.0-hybrid  49 SCEKIPTEFLQHFhGNVPHQ---CQLQ-TAARTWLVHV--EVVNNKFYFQEGWNAFLRQNGLKYGQLLVFHYAGNSHF--HVDIFG 126
                              44679999997765555444...5554.488*******..777777****************************9999..**9998 PP

                              S CS
                       B3  99 k 99 
                              k
  mrna26080.1-v1.0-hybrid 127 K 127
                              7 PP
2B351.32.1e-16383483298
                              EEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS........-EEEEEE..EEETTEEEE-TTHHHHHHHHT CS
                       B3   2 fkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesg........rsWevkliyrkksgryvltkGWkeFvkang 73 
                              +  l  s+++ s  l++p++fae+h      +        ++l+  ++        rs+ v++  +   +++ l++GW+eF+  n+
  mrna26080.1-v1.0-hybrid 383 VVSLCASYAGGSY-LSFPRTFAERHiingrpN-------YVILRVNWSflvnskkkRSFLVRV--NYIERTTRLQAGWSEFAYVNN 458
                              5666777777776.***********7743330.......444444444444444449999999..66666677************* PP

                              --TT-EEEEEE-SSSEE..EEEEE- CS
                       B3  74 LkegDfvvFkldgrsefelvvkvfr 98 
                              Lk gD++vF+l+++++fe+ v +fr
  mrna26080.1-v1.0-hybrid 459 LKMGDVCVFELTNTKKFEFEVEIFR 483
                              ***********999*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010190.003723128IPR003340B3 DNA binding domain
PfamPF023624.2E-1049127IPR003340B3 DNA binding domain
SuperFamilySSF1019365.89E-1650130IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.6E-1652130IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.37853128IPR003340B3 DNA binding domain
CDDcd100172.01E-953125No hitNo description
Gene3DG3DSA:2.40.330.105.4E-9205274IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.53E-8207286IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508636.047208286IPR003340B3 DNA binding domain
CDDcd100173.09E-6209286No hitNo description
Gene3DG3DSA:1.10.601.102.5E-4275358No hitNo description
Gene3DG3DSA:2.40.330.101.3E-19374484IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.81E-17375484IPR015300DNA-binding pseudobarrel domain
CDDcd100176.01E-14380483No hitNo description
PROSITE profilePS5086311.011381485IPR003340B3 DNA binding domain
SMARTSM010192.0E-6382485IPR003340B3 DNA binding domain
PfamPF023627.0E-13383483IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009005anatomyroot
PO:0007134developmental stagesporophyte vegetative stage
Sequence ? help Back to Top
Protein Sequence    Length: 516 aa     Download sequence    Send to blast
METPMRIRPR RQGMAIQTSG HLFLTTSEAT KQTLWLKDSK ENWDHQSESC EKIPTEFLQH  60
FHGNVPHQCQ LQTAARTWLV HVEVVNNKFY FQEGWNAFLR QNGLKYGQLL VFHYAGNSHF  120
HVDIFGKNTC GELFVMAETE EADEEDYDVS LEITDGSPVS SPLPRKKYKT SSSVKERGGT  180
SSSQRFIEKD LWGARIRAEE FKLKNPSAFL VSMKPSYIKY KFVWLPAEFT MLVKPRIENS  240
GDVILRVSDW SVRTWRAKLT CDNVSTNRCK LHGSWSEFMR DNNLKEDISD NEDHENDEEG  300
DDESEDEEET EDEEEGDDAS SEALNYVPPG SRTIASRLHK RRKNWTSSIV KAPRLSRDEK  360
ILNAIALKKA NAFQSESTHH SFVVSLCASY AGGSYLSFPR TFAERHIING RPNYVILRVN  420
WSFLVNSKKK RSFLVRVNYI ERTTRLQAGW SEFAYVNNLK MGDVCVFELT NTKKFEFEVE  480
IFRMTDAVCT SSQGKGKQLR TESINSRIKT EIQID*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna26080.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004299322.10.0PREDICTED: putative B3 domain-containing protein Os03g0621600
RefseqXP_011464332.10.0PREDICTED: putative B3 domain-containing protein Os03g0621600
STRINGXP_004299322.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2615523
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49480.13e-10related to vernalization1 1