PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna26073.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family bHLH
Protein Properties Length: 598aa    MW: 67149.4 Da    PI: 10.0341
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna26073.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.42.5e-13397442555
                              HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                              hn+ Er+RRdriN+++  L++l+P+a      K +Ka++L ++++Y+  Lq
  mrna26073.1-v1.0-hybrid 397 HNQSERKRRDRINQKMKALQRLVPNA-----NKTDKASMLDEVIRYLELLQ 442
                              9************************8.....6***************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF037632.9E-20127218IPR005516Remorin, C-terminal
PROSITE profilePS5088816.126392441IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.6E-16395462IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.19E-18395468IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.4E-11397442IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.83E-13397446No hitNo description
SMARTSM003531.1E-14398447IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 598 aa     Download sequence    Send to blast
MDYDSQESEF ATAVAAAAFA IHSMEQAELQ YQKERRKSLE TTRTNTLPDT KIRPSSGAAT  60
RRLSNKGANS TSGGASMKMP MGQDQRALDL ESVFPSRYAN RGNSIRPSTS ADGNQSRKGN  120
SRGHGNAVET KADAWEKAEM KKIQNRYEKV KAAILAWENE KKMQVKLKME RRKREMEQRR  180
AINMQHYQVK QERIDQIAGG ARAQVEVKRR NEESKTNHCK DRSDYDVTEL KLENGHLAIH  240
GLGGIVPTAP AKPTWSNRAC DTLESIVHQA TCHKLPETNL SSMVASSGGT WTDDSSQQPW  300
ANGWIRKRTR SDSDYHGKNV SSTSTTSNVH EEQTEYQMDN DTTLNTWTSF ESAKTKSNDD  360
DSTCHEGLEN QDVERETTKG HESSRSRSRP RRVAAIHNQS ERKRRDRINQ KMKALQRLVP  420
NANKTDKASM LDEVIRYLEL LQAQVQMMNS MRNGMQPHMN MMMPLGMQQQ QQQQHQMSIL  480
ARMGMTPVVP GALGMGMGMG MLNVSNMARM APHQSLQQQL IHPTPASFLP PFMVPQLMPP  540
KPDPATNANS DSFANPYCTF LAQQQSMNID LFNKMAAVFR QQVNHQSAAS SPSQSKH*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1160173KKMQVKLKMERRKR
2400405ERKRRD
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna26073.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004301128.20.0PREDICTED: transcription factor PIF7 isoform X1
TrEMBLA0A2P6P2V10.0A0A2P6P2V1_ROSCH; Putative transcription factor bHLH family
STRINGXP_004301128.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF129992432
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.15e-34bHLH family protein