PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna26028.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family M-type_MADS
Protein Properties Length: 701aa    MW: 79737 Da    PI: 6.3372
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna26028.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF70.71.3e-22283326245
                              ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
                   SRF-TF   2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 
                              + e++ nrqvt+skRrngilKKA+ELS+LCd+++ +++fs+tg+
  mrna26028.1-v1.0-hybrid 283 KLESSGNRQVTYSKRRNGILKKAKELSILCDVDITLLMFSPTGR 326
                              67999*************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.90.1550.105.2E-5112225No hitNo description
SuperFamilySSF556814.72E-4012229No hitNo description
PROSITE profilePS5173313.06638218IPR004143Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain
SMARTSM004321.5E-29274333IPR002100Transcription factor, MADS-box
PROSITE profilePS5006625.483274334IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.29E-25275368IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-18276296IPR002100Transcription factor, MADS-box
PfamPF003192.8E-20285328IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-18296311IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-18311332IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006464Biological Processcellular protein modification process
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009001anatomyfruit
PO:0007010developmental stagewhole plant fruit ripening stage
PO:0007027developmental stagewhole plant fruit formation stage 70% to final size
Sequence ? help Back to Top
Protein Sequence    Length: 701 aa     Download sequence    Send to blast
MAIPQRNVGL PLMNLVRLKG TPILQQLHLE ERLLRTSSDN WCIINDGTND RNIVMGISGK  60
HAELLDIDLV LRDQVPVIKR YTGGGTVAVD HGTIFVTFIC NRDAVPGLKL YPRPIMSWSS  120
QLYNRVFKRF GDFYLLENDY VFGNRKFGGN AQCITKDRWI HHTSFLWDYE ERNMAYLKHP  180
KRARDHLEFV CRMKDYVPRS VFIQKTVEAI SAEFSVESEH TDPFETNSKF VPSTRLLTRQ  240
ELEEAADRNS KEGSFMVVEC WCNWDESFIW RTVMGRVKLK IKKLESSGNR QVTYSKRRNG  300
ILKKAKELSI LCDVDITLLM FSPTGRPTLF QGERSNFEDI IAKFAHLTPQ ERAKRKLESL  360
EVLKKTFKKL DHDVNVQEFV GSSTQTVEDL TNHAREMQSQ LTELHKRLSF WSNPEKVDNV  420
EQLRQMEDML NESIRRTRLH KENFEKHQLA SLNCTSQVTN ALADAECLFH TLRKSENDFV  480
ASQFQNGIPS SLIVGSMQET QPIPWILNND NQHLLLPNEA TFLPHRDVDC STNASVARFN  540
SYFGGGASTS TSTGKQSEVG DPGQLDNMGQ IPSMEGGCGL NEYDINACLS TELGEQYAYP  600
SYCNPNVPDD KKLKSGLEMN LPTNSVDYQA STNFELPQSL YGDEHPSWLS SSGPSSIAVY  660
DENTYQQNFT GLTNQTDEGN LERYPRALML NGSLTPWGLV *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P3e-14274365190Myocyte-specific enhancer factor 2B
1tqe_Q3e-14274365190Myocyte-specific enhancer factor 2B
1tqe_R3e-14274365190Myocyte-specific enhancer factor 2B
1tqe_S3e-14274365190Myocyte-specific enhancer factor 2B
6c9l_A3e-14274365190Myocyte-specific enhancer factor 2B
6c9l_B3e-14274365190Myocyte-specific enhancer factor 2B
6c9l_C3e-14274365190Myocyte-specific enhancer factor 2B
6c9l_D3e-14274365190Myocyte-specific enhancer factor 2B
6c9l_E3e-14274365190Myocyte-specific enhancer factor 2B
6c9l_F3e-14274365190Myocyte-specific enhancer factor 2B
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna26028.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004301143.10.0PREDICTED: floral homeotic protein FBP1
RefseqXP_011464357.10.0PREDICTED: floral homeotic protein FBP1
RefseqXP_011464358.10.0PREDICTED: floral homeotic protein FBP1
RefseqXP_011464359.10.0PREDICTED: floral homeotic protein FBP1
TrEMBLA0A498JNB80.0A0A498JNB8_MALDO; Uncharacterized protein
STRINGXP_004301143.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF749933
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18750.13e-91AGAMOUS-like 65