PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna26022.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family Dof
Protein Properties Length: 463aa    MW: 50911.4 Da    PI: 7.851
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna26022.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof126.39.3e-40122182262
                   zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                              ++k+l+cprC+s++tkfCyynny+++qPr+fCkaC+ryWt+GG++rnvPvG+grrknk+s 
  mrna26022.1-v1.0-hybrid 122 PDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKACQRYWTAGGTMRNVPVGAGRRKNKNSA 182
                              7899******************************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074781.0E-31115179IPR003851Zinc finger, Dof-type
PfamPF027012.5E-32124180IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.863126180IPR003851Zinc finger, Dof-type
PROSITE patternPS013610128164IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009005anatomyroot
PO:0007134developmental stagesporophyte vegetative stage
Sequence ? help Back to Top
Protein Sequence    Length: 463 aa     Download sequence    Send to blast
MLLEAKDPAI KLFGMKIPLP AGADDEDLRF TSLAREEKRS RVDNQEEDVE DKDSPSTKAT  60
ESIEEQDDSP KTEDSTSMEM LPECNVNPKT PSIDEESAKP KSPEEKEQND ATNSKEKTLK  120
KPDKILPCPR CNSMDTKFCY YNNYNVNQPR HFCKACQRYW TAGGTMRNVP VGAGRRKNKN  180
SASHYRQITI SDALQVARMD APNGAHHPGL KSNGRVLSFG VDTPVCDSMA SVLNLANKKV  240
LNGTTRNGFH KSEELVFPAP CKDKENGDDI TASKPQIPNA NGFSSHIPCL PGVPWPYQWN  300
SAVPPPAFAP PGMPIPVFPA PYWNCGIPFQ VPVPWFNPQP ASPNQKTPNS ASSSPILGKH  360
SREREILRPE VHLEKEEPSK QKNGCVLVPK TLRIDDPSEA AKSSIWSTLG IKNDCISSGK  420
GLFKAFQSQS KGDQKKHVLE TSPAMLANPA ALSRSLNFHE ST*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00394DAPTransfer from AT3G47500Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna26022.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004299352.10.0PREDICTED: cyclic dof factor 1
TrEMBLA0A2P6P2P30.0A0A2P6P2P3_ROSCH; Putative transcription factor C2C2-Dof family
STRINGXP_004299352.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62534147
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47500.11e-111cycling DOF factor 3