PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna25984.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family bHLH
Protein Properties Length: 779aa    MW: 87054.3 Da    PI: 6.0529
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna25984.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH14.28e-05366415154
                              CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                      HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                              +r  +  rE++ R+++N+ f eL + l  +    ++   Ka+iL +A++ +k+L
  mrna25984.1-v1.0-hybrid 366 KRIHKAVREKQKREHLNDLFLELSDALGLN----QQNTGKATILCEATRLLKDL 415
                              6788899********************998....68899*********999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000837.94E-6363420No hitNo description
SuperFamilySSF474597.2E-11364429IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-7365433IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.509365415IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF031341.5E-24634710IPR004345TB2/DP1/HVA22-related protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 779 aa     Download sequence    Send to blast
MHHSKTAALL WFISALLFFS LFQMARRNSD SARSIHPSAS DSAIPIKDRR SALYEKMARD  60
LDEKGPMFLK RGQTSQSLSL FDLFTVKDGS VAPVLKAADP PVRANVLYLS SHYSLRISEA  120
LKPILDPYFD KLIWFQNSNL YHFSMFHASH HISPVPATQD EIEAEAAAVG AVVEGLCPLK  180
IVLDRVILTS TGVLLGCWQV VSGSDPMTIR AKLRTALPSA PENQLYDDAI LHTSFARLLG  240
EPKASSVVLS STSDQIHFFH ELVDRINNKL QGFEAVVTEL WYVEEFDVLA LALNGRMKMV  300
AWLVHPPALR YSCVLICTGK STDKEIGCEG MGSKDPAPVV DKVNGATPAP VDQACPGKKI  360
QGKVPKRIHK AVREKQKREH LNDLFLELSD ALGLNQQNTG KATILCEATR LLKDLLGQIE  420
SLRSENVSLL SESNYMTVEK NELREDTSAL ETQIERLQSE LQERVFQSKP DLNVPPVEVA  480
AHFTGNCLGL PAQESALQQS PAVFVMPLLP DLQTYPPADS AHLTSKTNSN VSKPHARYPT  540
STDCWPFQLL GEQPAAGKDA RQNDHSASGY NGHDENQYQE SCFCCPISPD EISPFLDFLD  600
IENSEMGSGA GSFLKVLLKN FDVLAGPVVS LVYPLYASIR AIETKSATDD RQWLTYWILY  660
SMITLFELTF AKLIEWIPIW SYAKLIMTCW LVIPYFSGAA YVYEHYVRPF FLNPQQTINI  720
WYVPRKKDGF SKPDDVLTAA EKYIEENGTE AFEKLIHRSD KSQRSGGSIF DDDHRYYY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna25984.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A1R3JAR20.0A0A1R3JAR2_COCAP; TB2/DP1/HVA22-related protein
STRINGXP_010092057.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF973833
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47640.33e-61bHLH family protein