PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna25959.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family WRKY
Protein Properties Length: 673aa    MW: 72805 Da    PI: 7.3998
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna25959.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.43.9e-30295354159
                              ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                     WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                              ++Dg++WrKYGqK  kg+++pr+YYrCt a +Cpv+k+v+r+a+d +++++tYeg Hnh+
  mrna25959.1-v1.0-hybrid 295 MNDGCQWRKYGQKIAKGNPCPRAYYRCTIApSCPVRKQVQRCADDMSILITTYEGAHNHP 354
                              58***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.0E-31280356IPR003657WRKY domain
SuperFamilySSF1182902.88E-27288356IPR003657WRKY domain
PROSITE profilePS5081128.346290356IPR003657WRKY domain
SMARTSM007741.1E-36295355IPR003657WRKY domain
PfamPF031061.3E-26296354IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 673 aa     Download sequence    Send to blast
MEAAAVEKPY HGDQEQEEKR VVLLESSTTA AAHDEHREAH GKEESVLKAG TERAGQKENN  60
ERKSSSPRQK NQSFGKQIST TSNIKGSSLA EPDHSVASTS SSRKEQDYQL ESARAEMSEV  120
REENQRLKKY LDRMMEDYQT LQMQYHDVQQ KATQSSKDTV VTDNHQDDEE SEQLSLSLGS  180
FSGKRKRVEE KSKSPSTQAG KEMETDDEKS LSLGLDCKYE APAKSSSTTT DQVPLSNPSP  240
ASSVEEVPKD EAGETWPPKK VLKTMRSLVE DEVAQQSPVK KARVSVRARC DTPTMNDGCQ  300
WRKYGQKIAK GNPCPRAYYR CTIAPSCPVR KQVQRCADDM SILITTYEGA HNHPLPMSAT  360
AMASTTSAAA SMLLSGSSSS SSRPGLNPSV GATTAAADLH GYNYYVSDNS RSRFYVPNSS  420
MSSSLPTITL DLTSNPSSSS SSHMNKFASS TLNSAHQVLY PPTSLNFGSS DQSNNIMSWN  480
NNGFLSYGNG TQLPYNNKNT ILGRQQQQQP VQNNMYQNYM QKNNPTPLQF QLPDPIAAAT  540
KAITADPSFQ SALAAALTSI IGSSSNGGSG SNNNNQNAGG DHFNNILAQK LKWGENFPGI  600
SSSNSATASS YLQTAIKGGN ITGCGSTYLS KPNSSPANIS QPGSLMFLQP PNSLPFATHK  660
SASTSPSEDH KS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-212953561777Probable WRKY transcription factor 4
2lex_A2e-212953561777Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in the transcriptional regulation of terpene biosynthesis in glandular trichomes (PubMed:24884371). Binds to the promoter of the linalool synthase TPS5 and promotes TPS5 gene transactivation (PubMed:24884371). In association with WRKY72B, contributes to basal defense against root-knot nematodes (RKNs) and potato aphids, as well as Mi-1-mediated gene-for-gene resistance to these pests (PubMed:20409007). Both WRKY72A and WRKY72B are not required for gene-for-gene resistance mediated by Pto, another tomato R gene (PubMed:20409007). {ECO:0000269|PubMed:20409007, ECO:0000269|PubMed:24884371}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna25959.1-v1.0-hybrid
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by infection with the root-knot nematode (RKN) Meloidogyne incognita and potato aphids. {ECO:0000269|PubMed:20409007}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150342e-33AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004299392.10.0PREDICTED: probable WRKY transcription factor 61
SwissprotA0A3Q7GFB51e-126WK72A_SOLLC; WRKY transcription factor 72A
TrEMBLA0A2P6P2H00.0A0A2P6P2H0_ROSCH; Putative transcription factor WRKY family
STRINGXP_004299392.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65034134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15130.11e-67WRKY DNA-binding protein 72
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Spyropoulou EA,Haring MA,Schuurink RC
    RNA sequencing on Solanum lycopersicum trichomes identifies transcription factors that activate terpene synthase promoters.
    BMC Genomics, 2014. 15: p. 402
    [PMID:24884371]