PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna25794.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | NAC | ||||||||
Protein Properties | Length: 188aa MW: 21749.6 Da PI: 8.3113 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 94.4 | 1.8e-29 | 18 | 166 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevd...iykvePwdLpk......kvkaeekewyfFskrdkkyatgk..... 72 lp+GfrF Ptdeelv +yL +k+ + ++++++i+e+d y+ +P++L +++++e+ew+fF+++d ++ +g+ mrna25794.1-v1.0-hybrid 18 LPVGFRFMPTDEELVRYYLMNKACFRAVPVADAIQEIDatrFYSNHPKNLAFyfnnavTFSNGEREWFFFIHEDDENYSGSccsha 103 79*************************999998888874447889*****854677766667999*****9998887755544443 PP NAM 73 rknratk.....sgyWkatgkdkevlskkgelvglkktLvfykg..rapkgektdWvmheyrl 128 +++r ++ g+Wk +g++++++sk+g++ +k L++++g +++k+++t+W + ey+l mrna25794.1-v1.0-hybrid 104 QRRRNVRevgngIGFWKPSGSENPIYSKDGNVFATKIFLTYFSGscHSKKPKRTHWKIVEYHL 166 333332223344799***************************7755789999**********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.05E-25 | 14 | 170 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 28.761 | 18 | 181 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.8E-16 | 19 | 166 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 188 aa Download sequence Send to blast |
MEAQKGEGEV VMSSDLLLPV GFRFMPTDEE LVRYYLMNKA CFRAVPVADA IQEIDATRFY 60 SNHPKNLAFY FNNAVTFSNG EREWFFFIHE DDENYSGSCC SHAQRRRNVR EVGNGIGFWK 120 PSGSENPIYS KDGNVFATKI FLTYFSGSCH SKKPKRTHWK IVEYHLQIRR EWVVLGKLQR 180 GMDYTGF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 1e-15 | 13 | 166 | 10 | 140 | Stress-induced transcription factor NAC1 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna25794.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011464326.1 | 1e-133 | PREDICTED: protein ATAF2-like | ||||
TrEMBL | A0A2P6QSM8 | 1e-105 | A0A2P6QSM8_ROSCH; Putative transcription factor NAM family | ||||
STRING | XP_004301123.1 | 1e-140 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14439 | 12 | 18 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G63790.1 | 8e-19 | NAC domain containing protein 102 |
Link Out ? help Back to Top | |
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Phytozome | mrna25794.1-v1.0-hybrid |