PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna25783.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | NAC | ||||||||
Protein Properties | Length: 181aa MW: 21034.9 Da PI: 8.7769 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 99.5 | 4.8e-31 | 18 | 159 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevd...iykvePwdLpkkvkaeekewyfFskrdkkyatgk.....rknra. 77 lp+GfrF Ptdeelv +yL +k+ + ++++++i+e+d y+ +P++L +++++e+ew+fF+++d ++ +g+ +++r mrna25783.1-v1.0-hybrid 18 LPVGFRFMPTDEELVRYYLMNKACFRAVPVADAIQEIDatrFYSNHPKNLV-TFSNGEREWFFFIHEDDENYSGScrshaQRRRNv 102 79*************************999998888874447889*****6.788899******9998887755533333222333 PP NAM 78 ....tksgyWkatgkdkevlskkgelvglkktLvfykg..rapkgektdWvmheyrl 128 g+Wk +g++++++sk+g++ +k L++++g +++k+++t+W m ey+l mrna25783.1-v1.0-hybrid 103 revgNGLGFWKPSGSENPIYSKDGNVFATKIFLTYFSGscHSKKPKRTHWKMVEYHL 159 333333799***************************7755789999**********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.53E-28 | 14 | 163 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 29.805 | 18 | 174 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.6E-17 | 19 | 159 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 181 aa Download sequence Send to blast |
MEAQKGEGEV VMSSDLLLPV GFRFMPTDEE LVRYYLMNKA CFRAVPVADA IQEIDATRFY 60 SNHPKNLVTF SNGEREWFFF IHEDDENYSG SCRSHAQRRR NVREVGNGLG FWKPSGSENP 120 IYSKDGNVFA TKIFLTYFSG SCHSKKPKRT HWKMVEYHLQ IRREWVVLGK LQRVMDYTGF 180 * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 4e-17 | 14 | 159 | 11 | 140 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna25783.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011464328.1 | 1e-135 | PREDICTED: protein ATAF2-like | ||||
TrEMBL | A0A2P6QSM8 | 1e-108 | A0A2P6QSM8_ROSCH; Putative transcription factor NAM family | ||||
STRING | XP_004301123.1 | 1e-128 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14439 | 12 | 18 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62380.1 | 3e-19 | NAC-domain protein 101 |
Link Out ? help Back to Top | |
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Phytozome | mrna25783.1-v1.0-hybrid |