PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna25772.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family C2H2
Protein Properties Length: 490aa    MW: 54062.3 Da    PI: 9.0941
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna25772.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.65e-0692112323
                              ETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                              C  Cgk F ++  L++H+++H
  mrna25772.1-v1.0-hybrid  92 CRECGKGFQSWKALVSHMKSH 112
                              9*******************9 PP
2zf-C2H212.20.00055316338123
                              EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                              y+C+ C+k+F++   L  H  +H
  mrna25772.1-v1.0-hybrid 316 YECGTCNKVFRSYQALGGHRASH 338
                              99**********99999998887 PP
3zf-C2H212.50.00044398420123
                              EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                              ++Cp+C k+F++   L  H r+H
  mrna25772.1-v1.0-hybrid 398 HSCPICLKVFPTGQALGGHKRSH 420
                              79******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.702931IPR007087Zinc finger, C2H2
SMARTSM003550.14931IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.48E-9931No hitNo description
PROSITE patternPS0002801131IPR007087Zinc finger, C2H2
PfamPF139123.7E-61132IPR007087Zinc finger, C2H2
SuperFamilySSF576671.48E-985112No hitNo description
SMARTSM003550.01290112IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.01190117IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.9E-492113IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS00028092112IPR007087Zinc finger, C2H2
PfamPF139128.9E-592113IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.18316343IPR007087Zinc finger, C2H2
SMARTSM003550.092316338IPR015880Zinc finger, C2H2-like
SuperFamilySSF576679.57E-8316338No hitNo description
PfamPF139121.6E-11316340IPR007087Zinc finger, C2H2
PROSITE patternPS000280318338IPR007087Zinc finger, C2H2
SuperFamilySSF576679.57E-8393420No hitNo description
SMARTSM003550.1398420IPR015880Zinc finger, C2H2-like
PfamPF139121.4E-11398421IPR007087Zinc finger, C2H2
PROSITE profilePS501578.787398420IPR007087Zinc finger, C2H2
PROSITE patternPS000280400420IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 490 aa     Download sequence    Send to blast
MEEDQEFKYF CKLCSKSFPC GRSLGGHMKS HLINNHSRDD QKFINSRVKV SSLENYTEKG  60
LESGPQAGYG LRENPRKTWR IAGSSEETSA LCRECGKGFQ SWKALVSHMK SHSNSTTNSS  120
ENEQDSWTSS KVVDSQSENE TTNTTRRRTA ASRRRTRYVG TTTTTSSSNP SVVNNNASSS  180
VTEIEQEQQE EVALCLMMLS RDVGHWGGLK FVADLDDSTS DDNSGFSDAP SALKMNRVSK  240
IKDATFETFK VKKLKKKMSQ EEVCVGGFSK SDKVKKNLIL EKTELAEAQL GSNKFNSSNK  300
RKLQYAYDHS SKRSKYECGT CNKVFRSYQA LGGHRASHKK IKGCFASKIE SSENTAEFDT  360
DLSTDHPVAS GHSKLSNLIH HQDVVVKAES NSTKSKGHSC PICLKVFPTG QALGGHKRSH  420
LIVGQTESKI NQSTIVIPKP ATPEVRDFLD LNLPAPVEEE SSTNHAAAAQ ALKPWWAGSN  480
HKPYEALVS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna25772.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004301124.10.0PREDICTED: zinc finger protein ZAT9-like
TrEMBLA0A2P6P2Y60.0A0A2P6P2Y6_ROSCH; Putative transcription factor C2H2 family
STRINGXP_004301124.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11013080
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.17e-24C2H2-like zinc finger protein