PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna25753.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 1478aa MW: 163495 Da PI: 6.946 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 59 | 5.7e-19 | 19 | 62 | 2 | 45 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 +i n +n qvtfskR g++KKA+EL++LC++e+ +++fs+ +k mrna25753.1-v1.0-hybrid 19 KIPNRINLQVTFSKRCSGLFKKASELCTLCGVEIVIVVFSPANK 62 689**************************************997 PP | |||||||
2 | SRF-TF | 62.4 | 5e-20 | 261 | 304 | 2 | 45 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 +i n sn qvtfskR +g++KKA+EL++LC++e+a+++fs+++k mrna25753.1-v1.0-hybrid 261 KIPNRSNLQVTFSKRCAGLFKKASELCTLCGVEIAIVVFSPSNK 304 588**************************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 3.3E-27 | 10 | 69 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 21.852 | 10 | 70 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 7.28E-29 | 11 | 80 | No hit | No description |
SuperFamily | SSF55455 | 8.89E-24 | 11 | 91 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.4E-21 | 19 | 66 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 22.441 | 252 | 312 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.6E-28 | 252 | 311 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.22E-24 | 253 | 335 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 9.65E-31 | 253 | 327 | No hit | No description |
PRINTS | PR00404 | 2.9E-14 | 254 | 274 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.7E-23 | 261 | 308 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.9E-14 | 274 | 289 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.9E-14 | 289 | 310 | IPR002100 | Transcription factor, MADS-box |
Gene3D | G3DSA:3.40.50.300 | 7.1E-53 | 856 | 1032 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
SuperFamily | SSF52540 | 4.26E-55 | 856 | 1091 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
CDD | cd00009 | 2.06E-26 | 881 | 1021 | No hit | No description |
SMART | SM00382 | 2.2E-20 | 888 | 1024 | IPR003593 | AAA+ ATPase domain |
Pfam | PF00004 | 4.2E-42 | 892 | 1021 | IPR003959 | ATPase, AAA-type, core |
Gene3D | G3DSA:1.10.8.60 | 5.6E-20 | 1033 | 1079 | No hit | No description |
Gene3D | G3DSA:1.10.8.60 | 5.6E-20 | 1151 | 1173 | No hit | No description |
SuperFamily | SSF52540 | 6.5E-50 | 1175 | 1375 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
Gene3D | G3DSA:3.40.50.300 | 2.0E-47 | 1177 | 1336 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
CDD | cd00009 | 6.94E-15 | 1188 | 1321 | No hit | No description |
SMART | SM00382 | 3.7E-10 | 1218 | 1329 | IPR003593 | AAA+ ATPase domain |
Pfam | PF00004 | 2.2E-28 | 1222 | 1320 | IPR003959 | ATPase, AAA-type, core |
Gene3D | G3DSA:1.10.8.60 | 2.5E-16 | 1337 | 1404 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009535 | Cellular Component | chloroplast thylakoid membrane | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005516 | Molecular Function | calmodulin binding | ||||
GO:0005524 | Molecular Function | ATP binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 1478 aa Download sequence Send to blast |
MAMKSKKPSQ GRQKIAIAKI PNRINLQVTF SKRCSGLFKK ASELCTLCGV EIVIVVFSPA 60 NKPFSFGHPS VESLIDRFLT SNPSSFSSST HQAPYCREVS IEHKLNMQLT QIQGRLEAEK 120 QRGEALDKMS EDSKRSSQCW WENSIAELGL DELQILKAAM EELKKNVTEQ VHQMNDPCNS 180 SVPFLMMNGF QTDHHLSDRK AVENGSHGSM IHPSAYSFVQ PPPQGYVKLN VANGKMKKNG 240 KMEHFKIKKP RQGRQKIAIT KIPNRSNLQV TFSKRCAGLF KKASELCTLC GVEIAIVVFS 300 PSNKPFSFGH PSVKALIGRF LTPSPSSFPI TIHQTLYPKK ASVEHELNMQ LIATEDRLEA 360 QKRRGEDLDK MSKDSEQSSD CWWEKPIEGL GLDELQMLKV AMEELKKNVT EQVHKMNGPA 420 IFSVPLSVMN LDHHLSERKF AEINGCHGSM IPRAYGHEMP SKGKKNSKPQ SRLSNSDSFA 480 SSGSLDFEPN EVNFASCLEQ ASTKYPSLIA KSAFIAQLTD VDDSPKGCKV WLSEPSMVSH 540 SFTPGSIVSV SLPCLKSRYS ESFPLSTLAD ECARRFGVGA CQQLDHDEPG NYFALATIFP 600 SAKVLKNGVR LSSNLSNTMG CLASGRTIFI HSIQNTVRAG LFSGTEKPRS TKDCLLVSDC 660 KELNLELVHS NRRLTMNSTS TNLSAEKSLY QPENGVLASP KTPLNRSKLS YSNSSPLASA 720 RREESASSVI TPDESFVEPF DVEEVFGDDT SKRLLQTCAT TWLYSRCLLR GNLVTIPVLS 780 QHCLLRVIGA KKLSDDKANR DLLHESSELV DEVNDAFLVK RETKVCFHLP SNLESKRRDL 840 STVQYKDAIA NTGDELSGLG GLSKEYAVLK DIIISSSMDT LSRLGLRPTK GVLLHGPPGT 900 GKTSLARLCA RDAGVNFFSV NGPEVVSQYY GKSEQALREV FDSASQAAPS VVFIDELDAI 960 APARKEGGEE LSLRMVATLL NLMDGITTTE RVLVIAATNK PDSIEPALRR PGRLDREIEL 1020 GVPSPKQRLE ILHVLVGEME HFLSDVQVQQ LANATHGFVG SDLAALCNEA AFSSLRRYVS 1080 CRYPHDYLHR ASSTYEDCSN SLMTSDCLEA STDMSKDYSD TTSSSITHLA FTLENCLSLH 1140 SKGTNQDDDE EELKVAFEDF ESARMKVRPS AMREVIVEVP KVNWEDVGGQ TEVKNQLIEA 1200 VMWPQMHQDE FKRIGISPPT GVLMFGPPGC SKTLMARAVA SEAHLNFLSV KGPELYSKWV 1260 GESEKAVRSV FAKARANAPA IIFFDEIDGL AAIRGKENDG VSVSDRVISQ LLVEMDGRFD 1320 RLLYVGPPDE TDREEIFRIH LNNMKCSYIN RRDLARQTGG YTGADIRLIC REAGLAAIEE 1380 SLCRKESLDA LEIKIQHLET AIRQSLQTSF LMGDGVLLHQ QIAKLMMMNW LRTSVEAYMV 1440 EELGLTNSPT GVDYNLFVGR PECNLESDQT NKSYGTS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ftk_F | 1e-117 | 826 | 1410 | 184 | 694 | TRANSITIONAL ENDOPLASMIC RETICULUM ATPASE |
5ftl_A | 1e-117 | 826 | 1410 | 184 | 694 | TRANSITIONAL ENDOPLASMIC RETICULUM ATPASE |
5ftl_B | 1e-117 | 826 | 1410 | 184 | 694 | TRANSITIONAL ENDOPLASMIC RETICULUM ATPASE |
5ftl_C | 1e-117 | 826 | 1410 | 184 | 694 | TRANSITIONAL ENDOPLASMIC RETICULUM ATPASE |
5ftl_D | 1e-117 | 826 | 1410 | 184 | 694 | TRANSITIONAL ENDOPLASMIC RETICULUM ATPASE |
5ftl_E | 1e-117 | 826 | 1410 | 184 | 694 | TRANSITIONAL ENDOPLASMIC RETICULUM ATPASE |
5ftl_F | 1e-117 | 826 | 1410 | 184 | 694 | TRANSITIONAL ENDOPLASMIC RETICULUM ATPASE |
5ftm_A | 1e-117 | 826 | 1410 | 184 | 694 | TRANSITIONAL ENDOPLASMIC RETICULUM ATPASE |
5ftm_B | 1e-117 | 826 | 1410 | 184 | 694 | TRANSITIONAL ENDOPLASMIC RETICULUM ATPASE |
5ftm_C | 1e-117 | 826 | 1410 | 184 | 694 | TRANSITIONAL ENDOPLASMIC RETICULUM ATPASE |
5ftm_D | 1e-117 | 826 | 1410 | 184 | 694 | TRANSITIONAL ENDOPLASMIC RETICULUM ATPASE |
5ftm_E | 1e-117 | 826 | 1410 | 184 | 694 | TRANSITIONAL ENDOPLASMIC RETICULUM ATPASE |
5ftm_F | 1e-117 | 826 | 1410 | 184 | 694 | TRANSITIONAL ENDOPLASMIC RETICULUM ATPASE |
5ftn_A | 1e-117 | 826 | 1410 | 184 | 694 | TRANSITIONAL ENDOPLASMIC RETICULUM ATPASE |
5ftn_B | 1e-117 | 826 | 1410 | 184 | 694 | TRANSITIONAL ENDOPLASMIC RETICULUM ATPASE |
5ftn_C | 1e-117 | 826 | 1410 | 184 | 694 | TRANSITIONAL ENDOPLASMIC RETICULUM ATPASE |
5ftn_D | 1e-117 | 826 | 1410 | 184 | 694 | TRANSITIONAL ENDOPLASMIC RETICULUM ATPASE |
5ftn_E | 1e-117 | 826 | 1410 | 184 | 694 | TRANSITIONAL ENDOPLASMIC RETICULUM ATPASE |
5ftn_F | 1e-117 | 826 | 1410 | 184 | 694 | TRANSITIONAL ENDOPLASMIC RETICULUM ATPASE |
5ifw_B | 1e-117 | 826 | 1410 | 185 | 695 | Transitional endoplasmic reticulum ATPase |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna25753.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011466672.1 | 0.0 | PREDICTED: calmodulin-interacting protein 111 | ||||
Refseq | XP_011466673.1 | 0.0 | PREDICTED: calmodulin-interacting protein 111 | ||||
Swissprot | Q9LET7 | 0.0 | CI111_ARATH; Calmodulin-interacting protein 111 | ||||
TrEMBL | A0A2P6RX69 | 0.0 | A0A2P6RX69_ROSCH; Putative ATPase, AAA-type, core, P-loop containing nucleoside triphosphate hydrolase | ||||
STRING | XP_004305276.1 | 0.0 | (Fragaria vesca) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24840.1 | 2e-44 | AGAMOUS-like 61 |
Link Out ? help Back to Top | |
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Phytozome | mrna25753.1-v1.0-hybrid |
Publications ? help Back to Top | |||
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