PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna25753.1-v1.0-hybrid
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family M-type_MADS
Protein Properties Length: 1478aa    MW: 163495 Da    PI: 6.946
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna25753.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF595.7e-191962245
                             ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
                   SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                             +i n +n qvtfskR  g++KKA+EL++LC++e+ +++fs+ +k
  mrna25753.1-v1.0-hybrid 19 KIPNRINLQVTFSKRCSGLFKKASELCTLCGVEIVIVVFSPANK 62
                             689**************************************997 PP

2SRF-TF62.45e-20261304245
                              ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
                   SRF-TF   2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 
                              +i n sn qvtfskR +g++KKA+EL++LC++e+a+++fs+++k
  mrna25753.1-v1.0-hybrid 261 KIPNRSNLQVTFSKRCAGLFKKASELCTLCGVEIAIVVFSPSNK 304
                              588**************************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.3E-271069IPR002100Transcription factor, MADS-box
PROSITE profilePS5006621.8521070IPR002100Transcription factor, MADS-box
CDDcd002657.28E-291180No hitNo description
SuperFamilySSF554558.89E-241191IPR002100Transcription factor, MADS-box
PfamPF003191.4E-211966IPR002100Transcription factor, MADS-box
PROSITE profilePS5006622.441252312IPR002100Transcription factor, MADS-box
SMARTSM004321.6E-28252311IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.22E-24253335IPR002100Transcription factor, MADS-box
CDDcd002659.65E-31253327No hitNo description
PRINTSPR004042.9E-14254274IPR002100Transcription factor, MADS-box
PfamPF003192.7E-23261308IPR002100Transcription factor, MADS-box
PRINTSPR004042.9E-14274289IPR002100Transcription factor, MADS-box
PRINTSPR004042.9E-14289310IPR002100Transcription factor, MADS-box
Gene3DG3DSA:3.40.50.3007.1E-538561032IPR027417P-loop containing nucleoside triphosphate hydrolase
SuperFamilySSF525404.26E-558561091IPR027417P-loop containing nucleoside triphosphate hydrolase
CDDcd000092.06E-268811021No hitNo description
SMARTSM003822.2E-208881024IPR003593AAA+ ATPase domain
PfamPF000044.2E-428921021IPR003959ATPase, AAA-type, core
Gene3DG3DSA:1.10.8.605.6E-2010331079No hitNo description
Gene3DG3DSA:1.10.8.605.6E-2011511173No hitNo description
SuperFamilySSF525406.5E-5011751375IPR027417P-loop containing nucleoside triphosphate hydrolase
Gene3DG3DSA:3.40.50.3002.0E-4711771336IPR027417P-loop containing nucleoside triphosphate hydrolase
CDDcd000096.94E-1511881321No hitNo description
SMARTSM003823.7E-1012181329IPR003593AAA+ ATPase domain
PfamPF000042.2E-2812221320IPR003959ATPase, AAA-type, core
Gene3DG3DSA:1.10.8.602.5E-1613371404No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009535Cellular Componentchloroplast thylakoid membrane
GO:0003677Molecular FunctionDNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0005524Molecular FunctionATP binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 1478 aa     Download sequence    Send to blast
MAMKSKKPSQ GRQKIAIAKI PNRINLQVTF SKRCSGLFKK ASELCTLCGV EIVIVVFSPA  60
NKPFSFGHPS VESLIDRFLT SNPSSFSSST HQAPYCREVS IEHKLNMQLT QIQGRLEAEK  120
QRGEALDKMS EDSKRSSQCW WENSIAELGL DELQILKAAM EELKKNVTEQ VHQMNDPCNS  180
SVPFLMMNGF QTDHHLSDRK AVENGSHGSM IHPSAYSFVQ PPPQGYVKLN VANGKMKKNG  240
KMEHFKIKKP RQGRQKIAIT KIPNRSNLQV TFSKRCAGLF KKASELCTLC GVEIAIVVFS  300
PSNKPFSFGH PSVKALIGRF LTPSPSSFPI TIHQTLYPKK ASVEHELNMQ LIATEDRLEA  360
QKRRGEDLDK MSKDSEQSSD CWWEKPIEGL GLDELQMLKV AMEELKKNVT EQVHKMNGPA  420
IFSVPLSVMN LDHHLSERKF AEINGCHGSM IPRAYGHEMP SKGKKNSKPQ SRLSNSDSFA  480
SSGSLDFEPN EVNFASCLEQ ASTKYPSLIA KSAFIAQLTD VDDSPKGCKV WLSEPSMVSH  540
SFTPGSIVSV SLPCLKSRYS ESFPLSTLAD ECARRFGVGA CQQLDHDEPG NYFALATIFP  600
SAKVLKNGVR LSSNLSNTMG CLASGRTIFI HSIQNTVRAG LFSGTEKPRS TKDCLLVSDC  660
KELNLELVHS NRRLTMNSTS TNLSAEKSLY QPENGVLASP KTPLNRSKLS YSNSSPLASA  720
RREESASSVI TPDESFVEPF DVEEVFGDDT SKRLLQTCAT TWLYSRCLLR GNLVTIPVLS  780
QHCLLRVIGA KKLSDDKANR DLLHESSELV DEVNDAFLVK RETKVCFHLP SNLESKRRDL  840
STVQYKDAIA NTGDELSGLG GLSKEYAVLK DIIISSSMDT LSRLGLRPTK GVLLHGPPGT  900
GKTSLARLCA RDAGVNFFSV NGPEVVSQYY GKSEQALREV FDSASQAAPS VVFIDELDAI  960
APARKEGGEE LSLRMVATLL NLMDGITTTE RVLVIAATNK PDSIEPALRR PGRLDREIEL  1020
GVPSPKQRLE ILHVLVGEME HFLSDVQVQQ LANATHGFVG SDLAALCNEA AFSSLRRYVS  1080
CRYPHDYLHR ASSTYEDCSN SLMTSDCLEA STDMSKDYSD TTSSSITHLA FTLENCLSLH  1140
SKGTNQDDDE EELKVAFEDF ESARMKVRPS AMREVIVEVP KVNWEDVGGQ TEVKNQLIEA  1200
VMWPQMHQDE FKRIGISPPT GVLMFGPPGC SKTLMARAVA SEAHLNFLSV KGPELYSKWV  1260
GESEKAVRSV FAKARANAPA IIFFDEIDGL AAIRGKENDG VSVSDRVISQ LLVEMDGRFD  1320
RLLYVGPPDE TDREEIFRIH LNNMKCSYIN RRDLARQTGG YTGADIRLIC REAGLAAIEE  1380
SLCRKESLDA LEIKIQHLET AIRQSLQTSF LMGDGVLLHQ QIAKLMMMNW LRTSVEAYMV  1440
EELGLTNSPT GVDYNLFVGR PECNLESDQT NKSYGTS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ftk_F1e-1178261410184694TRANSITIONAL ENDOPLASMIC RETICULUM ATPASE
5ftl_A1e-1178261410184694TRANSITIONAL ENDOPLASMIC RETICULUM ATPASE
5ftl_B1e-1178261410184694TRANSITIONAL ENDOPLASMIC RETICULUM ATPASE
5ftl_C1e-1178261410184694TRANSITIONAL ENDOPLASMIC RETICULUM ATPASE
5ftl_D1e-1178261410184694TRANSITIONAL ENDOPLASMIC RETICULUM ATPASE
5ftl_E1e-1178261410184694TRANSITIONAL ENDOPLASMIC RETICULUM ATPASE
5ftl_F1e-1178261410184694TRANSITIONAL ENDOPLASMIC RETICULUM ATPASE
5ftm_A1e-1178261410184694TRANSITIONAL ENDOPLASMIC RETICULUM ATPASE
5ftm_B1e-1178261410184694TRANSITIONAL ENDOPLASMIC RETICULUM ATPASE
5ftm_C1e-1178261410184694TRANSITIONAL ENDOPLASMIC RETICULUM ATPASE
5ftm_D1e-1178261410184694TRANSITIONAL ENDOPLASMIC RETICULUM ATPASE
5ftm_E1e-1178261410184694TRANSITIONAL ENDOPLASMIC RETICULUM ATPASE
5ftm_F1e-1178261410184694TRANSITIONAL ENDOPLASMIC RETICULUM ATPASE
5ftn_A1e-1178261410184694TRANSITIONAL ENDOPLASMIC RETICULUM ATPASE
5ftn_B1e-1178261410184694TRANSITIONAL ENDOPLASMIC RETICULUM ATPASE
5ftn_C1e-1178261410184694TRANSITIONAL ENDOPLASMIC RETICULUM ATPASE
5ftn_D1e-1178261410184694TRANSITIONAL ENDOPLASMIC RETICULUM ATPASE
5ftn_E1e-1178261410184694TRANSITIONAL ENDOPLASMIC RETICULUM ATPASE
5ftn_F1e-1178261410184694TRANSITIONAL ENDOPLASMIC RETICULUM ATPASE
5ifw_B1e-1178261410185695Transitional endoplasmic reticulum ATPase
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna25753.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011466672.10.0PREDICTED: calmodulin-interacting protein 111
RefseqXP_011466673.10.0PREDICTED: calmodulin-interacting protein 111
SwissprotQ9LET70.0CI111_ARATH; Calmodulin-interacting protein 111
TrEMBLA0A2P6RX690.0A0A2P6RX69_ROSCH; Putative ATPase, AAA-type, core, P-loop containing nucleoside triphosphate hydrolase
STRINGXP_004305276.10.0(Fragaria vesca)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.12e-44AGAMOUS-like 61
Publications ? help Back to Top
  1. Buaboocha T,Liao B,Zielinski RE
    Isolation of cDNA and genomic DNA clones encoding a calmodulin-binding protein related to a family of ATPases involved in cell division and vesicle fusion.
    Planta, 2001. 212(5-6): p. 774-81
    [PMID:11346951]
  2. Peltier JB,Ytterberg AJ,Sun Q,van Wijk KJ
    New functions of the thylakoid membrane proteome of Arabidopsis thaliana revealed by a simple, fast, and versatile fractionation strategy.
    J. Biol. Chem., 2004. 279(47): p. 49367-83
    [PMID:15322131]