PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna25555.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family bHLH
Protein Properties Length: 408aa    MW: 45430.5 Da    PI: 6.1274
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna25555.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH314.7e-102613011055
                              HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                              r+RR++iN+++  L+ l+P+      +K++ +++Le+Av+Y+k Lq
  mrna25555.1-v1.0-hybrid 261 RKRREKINERLRVLQNLVPNG-----TKVDISTMLEEAVHYVKFLQ 301
                              9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.894251300IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.07E-14253316IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-12256310IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.7E-11257306IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.08E-11260305No hitNo description
PfamPF000103.0E-7261301IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    Send to blast
MEYVGAVSEG EWSSLSGMYT AEEADFMARL LENCPLPSMP GMTFPDAFWH GNEESTMHMS  60
GNYEGSHCSL ETTNSNFITS DNENYYLSDS HRMLATNNNS NSSMSIDFGI GDVKTINTYL  120
SEGNDHDQCS NRETSKGNIE ESGGSKHEAV NLEKRRSQSS LPKINSMKRS QSTDNVQMNK  180
RSKAKKSLRV TTSNIEDGYA GPNRQTSSSC CSEDDSIVYE VSGGFSPTSS LSPKEDAVPD  240
LNGKSRARRG SASDPQSLYA RKRREKINER LRVLQNLVPN GTKVDISTML EEAVHYVKFL  300
QLQIKLLSSD DMWMYAPICY NGMDLGLDRK LTTPSQPQIR SREIQKNNQD QEKHYYREEE  360
GSRIQLSENV LCLAKEAACS LVRKPACPKP GKKSFTIALG DCNQIAY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1179185KRSKAKK
2260265RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna25555.1-v1.0-hybrid
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011459687.10.0PREDICTED: transcription factor bHLH54
TrEMBLA0A2P6PLD50.0A0A2P6PLD5_ROSCH; Putative transcription factor bHLH family
STRINGXP_004292132.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80733121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33880.19e-63ROOT HAIR DEFECTIVE 6-LIKE 2