PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna25554.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family bHLH
Protein Properties Length: 270aa    MW: 30282.7 Da    PI: 4.7134
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna25554.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.85.9e-111992391055
                              HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                              ++RRd+iNs++  L+ l+P+      +K++ +++Le++veY+k Lq
  mrna25554.1-v1.0-hybrid 199 KKRRDKINSRLRILQNLVPNG-----TKVDISTMLEETVEYVKFLQ 239
                              89*****************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.465189238IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.2E-10195244IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.76E-13196252IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.92E-11198243No hitNo description
PfamPF000103.4E-8199239IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.3E-12199248IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MEDQAFVPEG LYMFEDEDLI MSQLLADYCS VSSNDLNYQA SSSQVSFANF PSSHECSTAK  60
DMEGIANLYS RRIMATNYHN PEAFHPWDAN STTNSFFSQS EENAGMDQVM RNCNVGDHEV  120
VSENSKKRPC STSVDDVQKN KRNVKSKMTN QKPVLTRNIA DSCSSGDDEP MNANPQQDLS  180
PNARSSRELA IDPQRTYAKK RRDKINSRLR ILQNLVPNGT KVDISTMLEE TVEYVKFLQL  240
QIKLLSSDEL WMYAPVVNNG IGIGVQDLL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1198203KKRRDK
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna25554.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004292131.10.0PREDICTED: transcription factor bHLH54-like
TrEMBLA0A498JNG08e-59A0A498JNG0_MALDO; Uncharacterized protein
STRINGXP_004292131.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80733121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33880.12e-41ROOT HAIR DEFECTIVE 6-LIKE 2