PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna25546.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family bHLH
Protein Properties Length: 436aa    MW: 46761.9 Da    PI: 8.5973
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna25546.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH491.1e-15261306555
                              HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                              hn+ Er+RRd+iN+++ +L++l+P++      K +Ka++L +++eY+k+Lq
  mrna25546.1-v1.0-hybrid 261 HNQSERKRRDKINQRMKTLQKLVPNS-----SKTDKASMLDEVIEYLKQLQ 306
                              9************************8.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.36E-18254317IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.815256305IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.9E-13261306IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.73E-17261310No hitNo description
Gene3DG3DSA:4.10.280.101.6E-17261313IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.0E-18262311IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0009506Cellular Componentplasmodesma
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 436 aa     Download sequence    Send to blast
MSQCVPSWDF DDNPPPPPRN SLRSHSNATA PDASMSDYEV AELTWENGQV AMHGLGLPRL  60
PSKPPSWDKP RATGTLESIV NQATGTNLPR FSKLPFDNTL TSATGGGTNN ELVTWFDHHR  120
SVATSGAPSN TVTMDALVPC RNNQSDEPNS SHLIDSLVSV PGVLGSSAGT GLINGCSTRV  180
GSCSVAAAHG ENTRRMEKHA ASVARVPSTP EWNSRSPSVS GSATFGLDSQ QREASDQEER  240
KKRCTGKSSV STKRSRAAAI HNQSERKRRD KINQRMKTLQ KLVPNSSKTD KASMLDEVIE  300
YLKQLQAQVH VISRMNMPAM MLPMAMQQQL QMSMMAPRNM GMGIGMGMGM GMPGIGMDMN  360
NIALPNIAGV PPVLHPTAFM APMTSWDGSA GGADPLSAYL ACQSQPMSME AYSMMAAMYQ  420
QFHQQPAPSP SSSKS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1264269ERKRRD
2265270RKRRDK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00034PBMTransfer from AT4G00050Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna25546.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP6894231e-98KP689423.1 Prunus pseudocerasus isolate Unigene11342 bHLH transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004289799.10.0PREDICTED: transcription factor UNE10
TrEMBLA0A2P6SFM70.0A0A2P6SFM7_ROSCH; Putative transcription factor bHLH family
STRINGXP_004289799.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56763347
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.19e-68bHLH family protein