PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | mrna25541.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
|
||||||||
Family | LBD | ||||||||
Protein Properties | Length: 214aa MW: 23577.6 Da PI: 8.6064 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 93.2 | 3e-29 | 2 | 102 | 1 | 96 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvil 81 +C++C+vlr++C+++C+l++++ p++q++++ +v+k+FG++ +l++++a++e++r+++++sl++eA r+ +Pv+Ga+g++l mrna25541.1-v1.0-hybrid 2 SCNGCRVLRKGCSENCMLRQCIewmedPQAQAHATVFVAKFFGRAGLLSFINAVSETQRPALFQSLLFEAVGRTINPVNGATGLLL 87 6************************************************************************************* PP DUF260 82 klqqqleqlkaelal 96 +++++++q+++e ++ mrna25541.1-v1.0-hybrid 88 AGNWKVCQAAVERVM 102 **********99876 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 18.57 | 1 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.4E-24 | 2 | 101 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 214 aa Download sequence Send to blast |
MSCNGCRVLR KGCSENCMLR QCIEWMEDPQ AQAHATVFVA KFFGRAGLLS FINAVSETQR 60 PALFQSLLFE AVGRTINPVN GATGLLLAGN WKVCQAAVER VMSGGALEPL PEYSRRGVHH 120 VKQQRREERY FSKYSNKRRP ALLASGHVGD DERPDLDLSL KASSELRRHD HDRAATPSSV 180 EGSETSTFSR SGSSSADYTT NDLEGTKLLR LFV* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | mrna25541.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004289796.1 | 1e-158 | PREDICTED: LOB domain-containing protein 37-like | ||||
Swissprot | Q9SN23 | 5e-62 | LBD38_ARATH; LOB domain-containing protein 38 | ||||
TrEMBL | A0A2P6PLE0 | 1e-124 | A0A2P6PLE0_ROSCH; Putative transcription factor AS2-LOB family | ||||
STRING | XP_004289796.1 | 1e-158 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF721 | 34 | 136 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G49940.1 | 4e-64 | LOB domain-containing protein 38 |
Link Out ? help Back to Top | |
---|---|
Phytozome | mrna25541.1-v1.0-hybrid |