PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna25522.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | FAR1 | ||||||||
Protein Properties | Length: 188aa MW: 21230.2 Da PI: 10.3005 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 43.6 | 9.9e-14 | 38 | 100 | 2 | 71 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkke 71 fY++YAke+ F+v+ s ++k+ ng i+++++vCskeg+++ + kk r+r++tr +Cka++ v ++ mrna25522.1-v1.0-hybrid 38 FYKSYAKEARFNVKSSVTEKK--NGVIVRKEYVCSKEGTSKVTGKK-----RNRNQTRENCKARIAVVRR 100 *************99987776..*****************998888.....99************99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.2E-9 | 38 | 100 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 188 aa Download sequence Send to blast |
MDSQQSFDDT PIYCPQVKVD LIPIKNQEFQ TLQDVETFYK SYAKEARFNV KSSVTEKKNG 60 VIVRKEYVCS KEGTSKVTGK KRNRNQTREN CKARIAVVRR AKIVRAKGCE KRLKAGKEKG 120 RLKAAKKANG KGRFCHGCKK HDQQHDKRNC PKLKNKDGIL IAQTGEDTSD LSTDEEEYSS 180 RGVDQSV* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna25522.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A2P6QU81 | 9e-51 | A0A2P6QU81_ROSCH; Putative transcription factor FAR family | ||||
STRING | XP_004292126.1 | 3e-64 | (Fragaria vesca) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 6e-06 | FAR1-related sequence 5 |
Link Out ? help Back to Top | |
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Phytozome | mrna25522.1-v1.0-hybrid |