PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna25445.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family MYB_related
Protein Properties Length: 299aa    MW: 33016.8 Da    PI: 10.2676
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna25445.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.52e-10556147
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                             +++W +eE+  l+ +v ++G g W+tI +          R+  ++k++w+++
  mrna25445.1-v1.0-hybrid  5 KQKWNAEEEAALKAGVLKHGAGKWRTILKDPEfarilYLRSNVDLKDKWRNL 56
                             79***********************************88***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.767161IPR017930Myb domain
SuperFamilySSF466895.83E-14262IPR009057Homeodomain-like
SMARTSM007172.9E-5459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.3E-12556IPR009057Homeodomain-like
PfamPF002496.9E-7556IPR001005SANT/Myb domain
CDDcd116606.63E-17656No hitNo description
SuperFamilySSF467852.29E-18115195IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.102.9E-16116187IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM005263.3E-15116181IPR005818Linker histone H1/H5, domain H15
PROSITE profilePS5150426.44118186IPR005818Linker histone H1/H5, domain H15
PfamPF005382.7E-9123179IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0006357Biological Processregulation of transcription from RNA polymerase II promoter
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0000786Cellular Componentnucleosome
GO:0005730Cellular Componentnucleolus
GO:0003691Molecular Functiondouble-stranded telomeric DNA binding
GO:0033613Molecular Functionactivating transcription factor binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0070491Molecular Functionrepressing transcription factor binding
GO:1990841Molecular Functionpromoter-specific chromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MGAPKQKWNA EEEAALKAGV LKHGAGKWRT ILKDPEFARI LYLRSNVDLK DKWRNLSVMV  60
NGWGSRDKYR TVTRRMPQIP KEDSSMALSA GQSDEEVMDA KPMAASSDSQ QVSAPKRSIV  120
RLDDLIMEAI SSLKDPGGSN KTAIAAYIEE QYWAPPDFKR LLSAKLKFLT ASGKLIKVKR  180
RYRIAPTPTF SDKKRNSSMF PFEGRQRVSP KFDRDDGTML MRTQIDLELA RMRTMTSQEA  240
AAAAARAVAE AEAAIAEAEE AAREAEAAEA DAEVAQAFAD AAMKTLRGRN PGKMVKSM*
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats. {ECO:0000269|PubMed:19102728}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00607ChIP-seqTransfer from AT1G49950Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna25445.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFR8285610.0FR828561.1 Rosa hybrid cultivar mRNA for putative MYB transcription factor (myb10 gene), cultivar Yellow Island.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011457840.10.0PREDICTED: telomere repeat-binding factor 1-like
SwissprotQ8VWK41e-95TRB1_ARATH; Telomere repeat-binding factor 1
TrEMBLA0A2P6PL551e-167A0A2P6PL55_ROSCH; Putative transcription factor MYB-HB-like family
STRINGXP_004289777.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF145333101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.33e-95telomere repeat binding factor 1
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Features of Arabidopsis genes and genome discovered using full-length cDNAs.
    Plant Mol. Biol., 2006. 60(1): p. 69-85
    [PMID:16463100]
  2. Schrumpfová PP, et al.
    Telomere repeat binding proteins are functional components of Arabidopsis telomeres and interact with telomerase.
    Plant J., 2014. 77(5): p. 770-81
    [PMID:24397874]
  3. Liang SC, et al.
    Kicking against the PRCs - A Domesticated Transposase Antagonises Silencing Mediated by Polycomb Group Proteins and Is an Accessory Component of Polycomb Repressive Complex 2.
    PLoS Genet., 2015. 11(12): p. e1005660
    [PMID:26642436]
  4. Fulcher N,Riha K
    Using Centromere Mediated Genome Elimination to Elucidate the Functional Redundancy of Candidate Telomere Binding Proteins in Arabidopsis thaliana.
    Front Genet, 2015. 6: p. 349
    [PMID:26779251]
  5. Kotliński M, et al.
    Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain.
    Plant Physiol., 2017. 174(1): p. 27-34
    [PMID:28298478]