PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna25394.1-v1.0-hybrid
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family AP2
Protein Properties Length: 519aa    MW: 56425.8 Da    PI: 6.3589
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna25394.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.36.7e-17164213155
                      AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                              s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  mrna25394.1-v1.0-hybrid 164 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 213
                              78*******************......55************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008476.1E-9164213IPR001471AP2/ERF domain
SuperFamilySSF541713.47E-15164222IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.5E-16165221IPR001471AP2/ERF domain
SMARTSM003808.1E-31165227IPR001471AP2/ERF domain
PROSITE profilePS5103217.385165221IPR001471AP2/ERF domain
CDDcd000183.50E-20256343No hitNo description
PfamPF008477.8E-5256333IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.6E-12257342IPR001471AP2/ERF domain
SMARTSM003801.2E-24257347IPR001471AP2/ERF domain
PROSITE profilePS5103214.447257341IPR001471AP2/ERF domain
PRINTSPR003675.5E-6258269IPR001471AP2/ERF domain
SuperFamilySSF541712.22E-8305342IPR016177DNA-binding domain
PRINTSPR003675.5E-6323343IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 519 aa     Download sequence    Send to blast
MLDLNLSAVG SSEQDDAVVV VGGSSHGMFP EGSGSATQMD ESGTSNSSVV NADASSTNDD  60
SCSARAAVTT LNFDILKVGG GDEEEEDDVV VTKELFPVNS WPGTGQQYSP ASSSARQSLI  120
ELGFNHGGPP AEVRLVQQKQ PQPPPPPPPP QVKKSRRGPR SRSSQYRGVT FYRRTGRWES  180
HIWDCGKQVY LGGFDTAHAA ARAYDRAAIK FRGVDADINY NLSDYEEDMK QMKNLTKEEF  240
VHILRRQSTG FSRGSSKYRG VTLHKCGRWE ARMGQFLGKK MSLSAYFKEK ELWAWWFIVG  300
VTMLACRYIY LGLFDSEVEA ARAYDKAAIK CNGREAVTNF EASTYEGEMI SDAGNEDGNH  360
NLDLNLGISP PSFGSRQKQG EGQLQFDSGP CEGQNGKTTR MEPNANATMN PPPFNGVTMT  420
SEHPPLWNGV YPNFFPNQER ATEKRIALGS QGPPNWAWQM HGQVSASPMP LFSTAASSGF  480
SFTATTPSAA VLPLIPSNPA ALNLCFTSSA TAAHRTPQ*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00615PBMTransfer from AT2G28550Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna25394.1-v1.0-hybrid
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP7844370.0KP784437.1 Rosa chinensis putative RAP2-1 protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011461366.10.0PREDICTED: ethylene-responsive transcription factor RAP2-7-like isoform X1
SwissprotQ9SK031e-112RAP27_ARATH; Ethylene-responsive transcription factor RAP2-7
TrEMBLA0A3S8T9550.0A0A3S8T955_FRAAN; Transcription factor AP217
STRINGXP_004295997.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28073476
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.31e-108related to AP2.7