PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna25394.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | AP2 | ||||||||
Protein Properties | Length: 519aa MW: 56425.8 Da PI: 6.3589 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 53.3 | 6.7e-17 | 164 | 213 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g mrna25394.1-v1.0-hybrid 164 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 213 78*******************......55************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 6.1E-9 | 164 | 213 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.47E-15 | 164 | 222 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 2.5E-16 | 165 | 221 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 8.1E-31 | 165 | 227 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.385 | 165 | 221 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.50E-20 | 256 | 343 | No hit | No description |
Pfam | PF00847 | 7.8E-5 | 256 | 333 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.6E-12 | 257 | 342 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.2E-24 | 257 | 347 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 14.447 | 257 | 341 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.5E-6 | 258 | 269 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.22E-8 | 305 | 342 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 5.5E-6 | 323 | 343 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 519 aa Download sequence Send to blast |
MLDLNLSAVG SSEQDDAVVV VGGSSHGMFP EGSGSATQMD ESGTSNSSVV NADASSTNDD 60 SCSARAAVTT LNFDILKVGG GDEEEEDDVV VTKELFPVNS WPGTGQQYSP ASSSARQSLI 120 ELGFNHGGPP AEVRLVQQKQ PQPPPPPPPP QVKKSRRGPR SRSSQYRGVT FYRRTGRWES 180 HIWDCGKQVY LGGFDTAHAA ARAYDRAAIK FRGVDADINY NLSDYEEDMK QMKNLTKEEF 240 VHILRRQSTG FSRGSSKYRG VTLHKCGRWE ARMGQFLGKK MSLSAYFKEK ELWAWWFIVG 300 VTMLACRYIY LGLFDSEVEA ARAYDKAAIK CNGREAVTNF EASTYEGEMI SDAGNEDGNH 360 NLDLNLGISP PSFGSRQKQG EGQLQFDSGP CEGQNGKTTR MEPNANATMN PPPFNGVTMT 420 SEHPPLWNGV YPNFFPNQER ATEKRIALGS QGPPNWAWQM HGQVSASPMP LFSTAASSGF 480 SFTATTPSAA VLPLIPSNPA ALNLCFTSSA TAAHRTPQ* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00615 | PBM | Transfer from AT2G28550 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna25394.1-v1.0-hybrid |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KP784437 | 0.0 | KP784437.1 Rosa chinensis putative RAP2-1 protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011461366.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor RAP2-7-like isoform X1 | ||||
Swissprot | Q9SK03 | 1e-112 | RAP27_ARATH; Ethylene-responsive transcription factor RAP2-7 | ||||
TrEMBL | A0A3S8T955 | 0.0 | A0A3S8T955_FRAAN; Transcription factor AP217 | ||||
STRING | XP_004295997.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2807 | 34 | 76 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28550.3 | 1e-108 | related to AP2.7 |
Link Out ? help Back to Top | |
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Phytozome | mrna25394.1-v1.0-hybrid |