PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna25382.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family B3
Protein Properties Length: 185aa    MW: 21079.4 Da    PI: 7.9238
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna25382.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B335.41.9e-1148155297
                              EEE-..-HHHHTT-EE--HHH.HTT.............---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHH.HHHHHH CS
                       B3   2 fkvltpsdvlksgrlvlpkkfaeeh.............ggkkeesktltledesg.rsWevkliyrkksgryvltkGWk.eFvkan 72 
                              +k+lt sd + ++rl +pk+ +++                 +  + t+t++d++   + e+ ++y+ + ++yvl+++Wk eFv+  
  mrna25382.1-v1.0-hybrid  48 KKKLTVSDLGDLSRLLVPKTLTQKKvlplmnksldervH--SSDGGTVTVYDSDMkTKHELVFKYWPSCKSYVLQANWKkEFVNVR 131
                              689999****************9999*999987776431..225569999998886677888888*************737***** PP

                              T--TT-EEEEEE-SS.SEE..EEEEE CS
                       B3  73 gLkegDfvvFkldgr.sefelvvkvf 97 
                              +LkegD + ++ d r s f  v++++
  mrna25382.1-v1.0-hybrid 132 KLKEGDLIGLYWDARsSAF--VFSLL 155
                              ***********98775655..77665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019366.28E-1643161IPR015300DNA-binding pseudobarrel domain
CDDcd100175.02E-1645155No hitNo description
Gene3DG3DSA:2.40.330.101.2E-1645158IPR015300DNA-binding pseudobarrel domain
SMARTSM010198.6E-447158IPR003340B3 DNA binding domain
PfamPF023624.9E-849155IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MAETLLFPSL FASTRVQDQP CQLNQADNRG LDLGLSLGSI DYDPWTIKKK LTVSDLGDLS  60
RLLVPKTLTQ KKVLPLMNKS LDERVHSSDG GTVTVYDSDM KTKHELVFKY WPSCKSYVLQ  120
ANWKKEFVNV RKLKEGDLIG LYWDARSSAF VFSLLQRALK IDTTVACRYC WILEELNEIL  180
EEIK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna25382.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011461356.11e-134PREDICTED: B3 domain-containing protein At2g33720-like
TrEMBLA0A059C5V81e-33A0A059C5V8_EUCGR; Uncharacterized protein
STRINGXP_004295728.11e-101(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF5791221
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33720.11e-21B3 family protein