PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna25374.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family MYB_related
Protein Properties Length: 615aa    MW: 67751.9 Da    PI: 6.2249
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna25374.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.51.3e-07306343342
                              SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHH CS
          Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcks 42 
                              +W++++ el++++++++G++ ++ +a  ++ gRt+ ++k 
  mrna25374.1-v1.0-hybrid 306 KWSEQDIELFYEGIELFGSD-FHMVALLFP-GRTRDHIKF 343
                              8*******************.*********.*******95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF159639.3E-23297375No hitNo description
SMARTSM007172.8E-5303351IPR001005SANT/Myb domain
SuperFamilySSF466893.74E-8306353IPR009057Homeodomain-like
CDDcd001675.42E-4306338No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 615 aa     Download sequence    Send to blast
MKGAESLTIE HCEIRLETKE FEALNVVSEA PISTGRHAGK FQPKLTVKKG KENPNVPHAE  60
VESTTLPQPA HFKTGEMDEI SLCAFPREDV HNHILPTFGD SIASNPTPSF QANAETTQLD  120
EAEYGDGAHS EGGHKCGTGK ASTASNRPQK RKGSAVDEDA KDGNNTYEDS FDAENTSDFD  180
GNENGEHNSA RRKRVPRKSK IPVSDNEPVQ KRKRTKKAPD EPTEEPTKKF SHSTCRNRRR  240
ADKSLIEMPE DEIDPQKNSI AGSYSTSRIK EAAKLKTQAS NHRDRVSASS FSLNYTSFMK  300
KPRPVKWSEQ DIELFYEGIE LFGSDFHMVA LLFPGRTRDH IKFKHKKEKR KNPLRIDEAL  360
HHRPKDNSKY ALVINEMLKL AGQTEESNSD ELSDMVDLEE EELTQNRGEV TTPELDKIED  420
METDGAAEVQ HEEAAVSEVH SPMKSNQSDH GDDFGGERQS GHHTASDGTG RNGGDIAVGG  480
SSSAVVTTSE NHAKSVFRTP KIPSLPKAEC CKPAEEPQGT PGLMKTEKSS LMEKKGQKRE  540
VCERAKRLSW IGKQARSDTD DGSSGSARPK LKSPLKYKPV VDSDIGRMVV EESAGSSSQA  600
NSSSEPMLCE EVTT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1191213RKRVPRKSKIPVSDNEPVQKRKR
2209216QKRKRTKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna25374.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011457825.10.0PREDICTED: uncharacterized protein LOC101303570
RefseqXP_011457826.10.0PREDICTED: uncharacterized protein LOC101303570
RefseqXP_011457827.10.0PREDICTED: uncharacterized protein LOC101303570
TrEMBLA0A2P6QG630.0A0A2P6QG63_ROSCH; Putative transcription factor MYB/SANT family
STRINGXP_004292009.11e-164(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF36662938
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39160.18e-20MYB_related family protein