PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna25330.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family Dof
Protein Properties Length: 361aa    MW: 39094.4 Da    PI: 7.0693
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna25330.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof128.81.6e-4078139263
                   zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 
                              +++alkcprCdstntkfCyynnysl+qPryfCk+CrryWtkGG+lrnvPvGgg+rknk+sss
  mrna25330.1-v1.0-hybrid  78 PDQALKCPRCDSTNTKFCYYNNYSLTQPRYFCKSCRRYWTKGGTLRNVPVGGGCRKNKRSSS 139
                              7999******************************************************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074782.0E-2776131IPR003851Zinc finger, Dof-type
PfamPF027016.1E-3479136IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.58182136IPR003851Zinc finger, Dof-type
PROSITE patternPS01361084120IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005730Cellular Componentnucleolus
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009005anatomyroot
PO:0007134developmental stagesporophyte vegetative stage
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MGIMIVNLFL VLVFAKELDA RGGGDGGGAL VVVAGGLMDP SSGQQHHQEM QAHNSLDMLV  60
CSKSQQQSAD QRKPRPQPDQ ALKCPRCDST NTKFCYYNNY SLTQPRYFCK SCRRYWTKGG  120
TLRNVPVGGG CRKNKRSSSK RSSQDPQQPL TPNSNPLLPT LSYDSNDLSL AFARLQRSCG  180
QMGFDDHLSM LANPTTNSQS DILSNSSSAS PSPGFLDALR TGFLETHNNG FPNNLYYGFG  240
SNGGNNMVGE VEMDNGVCGE MGLHPYEELS NVAATTAVTV TTMKQELSRD IETNNNKVLW  300
GFPWQMNNGD HHNLNMGGGG GGSGVHHEFD NSGRESWNGL GNPSWNGLGN PSWHGLLPLV  360
*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna25330.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004294679.10.0PREDICTED: dof zinc finger protein DOF5.3-like
TrEMBLA0A2P6QHW30.0A0A2P6QHW3_ROSCH; Putative transcription factor C2C2-Dof family
STRINGXP_004294679.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF50263051
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60200.11e-35TARGET OF MONOPTEROS 6