PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna25277.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | MYB_related | ||||||||
Protein Properties | Length: 102aa MW: 11717.3 Da PI: 9.7296 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 26.5 | 1.5e-08 | 13 | 58 | 2 | 44 |
SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 rWT+ + + +a +++ ++ +W +a+ +g ++t++++k ++ mrna25277.1-v1.0-hybrid 13 SRWTPKQNKVFERALALYDKDtpdRWQNVAKAVGGNKTPEEVKRHY 58 59*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 6.76 | 7 | 62 | IPR017877 | Myb-like domain |
SMART | SM00717 | 4.4E-7 | 11 | 64 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.32E-12 | 13 | 70 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.6E-4 | 14 | 68 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.03E-5 | 14 | 58 | No hit | No description |
Pfam | PF00249 | 2.4E-6 | 14 | 58 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 102 aa Download sequence Send to blast |
MASSSLKRQD SNSRWTPKQN KVFERALALY DKDTPDRWQN VAKAVGGNKT PEEVKRHYDI 60 LLEDLRQIES GQVPIPNYKS LGITTTKVDE EERLLKYLKL Q* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 1e-31 | 1 | 101 | 1 | 93 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna25277.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004292033.1 | 1e-69 | PREDICTED: protein RADIALIS-like 3 | ||||
Swissprot | Q1A173 | 3e-35 | RADL6_ARATH; Protein RADIALIS-like 6 | ||||
TrEMBL | A0A2P6PP97 | 3e-53 | A0A2P6PP97_ROSCH; Putative transcription factor MYB-HB-like family | ||||
STRING | XP_004292033.1 | 5e-69 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF154 | 34 | 280 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75250.2 | 1e-37 | RAD-like 6 |
Link Out ? help Back to Top | |
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Phytozome | mrna25277.1-v1.0-hybrid |