PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna25273.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | bHLH | ||||||||
Protein Properties | Length: 333aa MW: 36952.3 Da PI: 5.2379 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 31.2 | 3.9e-10 | 146 | 193 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq mrna25273.1-v1.0-hybrid 146 SHSLAERVRREKISERMKYLQDLVPGC----NKITGKAGMLDEIINYVQSLQ 193 8**************************....999*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 1.05E-10 | 140 | 197 | No hit | No description |
SuperFamily | SSF47459 | 4.19E-17 | 140 | 211 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.5E-17 | 142 | 209 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.618 | 142 | 192 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.6E-7 | 146 | 193 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.3E-9 | 148 | 198 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006351 | Biological Process | transcription, DNA-templated | ||||
GO:0009637 | Biological Process | response to blue light | ||||
GO:0009911 | Biological Process | positive regulation of flower development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009001 | anatomy | fruit | ||||
PO:0007010 | developmental stage | whole plant fruit ripening stage | ||||
PO:0007027 | developmental stage | whole plant fruit formation stage 70% to final size |
Sequence ? help Back to Top |
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Protein Sequence Length: 333 aa Download sequence Send to blast |
MFGGLDLIGA DAVDDNINNY HDSSAVVNDL NHESYLSPLP IHNVGVEKER SIFLAFKAPP 60 RPSRQPIFKV PPSLTDYGAV GEDDSSDKRM KGCAEEGDSK ITEQNSPKNN DRESSADTSK 120 GNSKASEVQK PDYIHVRARR GQATDSHSLA ERVRREKISE RMKYLQDLVP GCNKITGKAG 180 MLDEIINYVQ SLQRQVEFLS MKLAAVNPRL DFNIDDLITK EMFPANMVNF PTIGMSSEMT 240 SSAYLQFNHV QQLLQCSGLE SSGISSPDST LLRRSFSTPV SVPETFADTS CFTQVQPPTT 300 WDADMQNLFN VEFHQGRTAP FQSQPLFTGR YN* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds DNA to G box 5'-CACGTG-3' and, to a lower extent, to E-box 5'-CANNTG-3' in vitro. Binds to chromatin DNA of the FT gene and promotes its expression, and thus triggers flowering in response to blue light. {ECO:0000269|PubMed:18988809, ECO:0000269|PubMed:24130508}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna25273.1-v1.0-hybrid |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Accumulates strongly in response to blue light due to reduced preventing 26S proteasome-mediated degradation in an ADO1/ZTL and ADO2/LKP2 dependent manner, but levels decrease in the absence of blue light via 26S proteasome degradation (at protein level). {ECO:0000269|PubMed:24101505}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004289668.1 | 0.0 | PREDICTED: transcription factor bHLH63 | ||||
Swissprot | Q8GY61 | 1e-61 | BH063_ARATH; Transcription factor bHLH63 | ||||
TrEMBL | A0A2P6PP85 | 1e-167 | A0A2P6PP85_ROSCH; Putative transcription factor bHLH family | ||||
STRING | XP_004289668.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3618 | 34 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G34530.1 | 5e-64 | cryptochrome-interacting basic-helix-loop-helix 1 |
Link Out ? help Back to Top | |
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Phytozome | mrna25273.1-v1.0-hybrid |