PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna25185.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family ERF
Protein Properties Length: 370aa    MW: 41067.6 Da    PI: 4.4807
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna25185.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2431.1e-1391133147
                      AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaai 47 
                              s ykGVr++k +g+++AeIrd +     r  r ++g+f+taeeA  a+ 
  mrna25185.1-v1.0-hybrid  91 SLYKGVRRRK-WGKYAAEIRDpF-----RgVREWIGTFDTAEEASVAYQ 133
                              57*****998.**********66.....56**************99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.75E-1991132No hitNo description
SuperFamilySSF541714.12E-1591139IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.0E-1892139IPR001471AP2/ERF domain
PfamPF008472.3E-792134IPR001471AP2/ERF domain
SMARTSM003801.4E-1392146IPR001471AP2/ERF domain
PROSITE profilePS5103217.68892153IPR001471AP2/ERF domain
PRINTSPR003674.6E-893104IPR001471AP2/ERF domain
PRINTSPR003674.6E-8115131IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009001anatomyfruit
PO:0007010developmental stagewhole plant fruit ripening stage
PO:0007027developmental stagewhole plant fruit formation stage 70% to final size
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MKVMAKQSRK EEDTSLKRRV RIMYTDPYAT DSSSEDDEQC NVNEYQSVPG KKVFVSEIVV  60
GGMQDESYAY GGRIGNTKNS DGSNKSQRSS SLYKGVRRRK WGKYAAEIRD PFRGVREWIG  120
TFDTAEEASV AYQNRRLQFD NMKLELKRKI DYEDLHISNK GFESSHLTDK SNHQYKCQSF  180
HLSGDSQDSS VAAAPANETF TYEETTSLFC HPSPSSVLDL PPSKAALGGS EQPLSEEELS  240
NLKFPEAPLS SPSSAEEGYV LPLTEEALSI LNVPEVPTCS AVSAEEDFLQ DKLSSLKFTE  300
GLILSPIRTE DLGSLNLGYM DSDIIDGLDQ LFVSMSDIVD PPVYCDGNGQ NILPPRKFLM  360
SDLAGFCWD*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19399KGVRRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna25185.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004300530.10.0PREDICTED: ethylene-responsive transcription factor ERF118-like
RefseqXP_011465400.10.0PREDICTED: ethylene-responsive transcription factor ERF118-like
TrEMBLA0A3Q8TB270.0A0A3Q8TB27_FRAAN; Transcription factor ERF45
STRINGXP_004300530.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF134512027
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68550.22e-25ERF family protein