PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna25163.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family NAC
Protein Properties Length: 377aa    MW: 42123.2 Da    PI: 7.2721
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna25163.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM176.48.1e-5551311129
                      NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 
                              lppGfrFhPtdeel+++yL +kv++ +++  ++++ vd++k+ePwdLp k++ +ekewyfF  rd+ky+tg r+nrat++gyWk+t
  mrna25163.1-v1.0-hybrid   5 LPPGFRFHPTDEELITYYLGRKVSDVSFTS-QAVAVVDLNKCEPWDLPGKASMGEKEWYFFNLRDRKYPTGLRTNRATEAGYWKTT 89 
                              79*************************999.88***************988999******************************** PP

                      NAM  87 gkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                              gkdke+l+ +g lvg+kktLvfykgrap+gekt+Wvmheyrle
  mrna25163.1-v1.0-hybrid  90 GKDKEILR-QGVLVGMKKTLVFYKGRAPRGEKTNWVMHEYRLE 131
                              *******9.99******************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.62E-633154IPR003441NAC domain
PROSITE profilePS5100560.1975154IPR003441NAC domain
PfamPF023652.0E-286130IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MQENLPPGFR FHPTDEELIT YYLGRKVSDV SFTSQAVAVV DLNKCEPWDL PGKASMGEKE  60
WYFFNLRDRK YPTGLRTNRA TEAGYWKTTG KDKEILRQGV LVGMKKTLVF YKGRAPRGEK  120
TNWVMHEYRL ENKHHPFKSS ASKEEWVVCR VFQKSIALKK PQQMTSSSPQ SVDSPGETNS  180
MVNEFGDVEL PNFMNNVANS SSPGFISNMS IPQGNNYNII DSKMINNDVN MMNTTLNMNN  240
WLGAREAAAS GAILPAAALG SWPSSLLSPS NLSSVNSLLL RALQLRSNSA STNSTIYQQP  300
IRSDDAAAGL EDHYSSFMEA QQQQQRQPGL MSHFGTDHNM NSSNVQASSS SKDQIMDSMP  360
QSQQHLEQPF NLDSIW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-57216014171NO APICAL MERISTEM PROTEIN
1ut4_B5e-57216014171NO APICAL MERISTEM PROTEIN
1ut7_A5e-57216014171NO APICAL MERISTEM PROTEIN
1ut7_B5e-57216014171NO APICAL MERISTEM PROTEIN
3swm_A5e-57216017174NAC domain-containing protein 19
3swm_B5e-57216017174NAC domain-containing protein 19
3swm_C5e-57216017174NAC domain-containing protein 19
3swm_D5e-57216017174NAC domain-containing protein 19
3swp_A5e-57216017174NAC domain-containing protein 19
3swp_B5e-57216017174NAC domain-containing protein 19
3swp_C5e-57216017174NAC domain-containing protein 19
3swp_D5e-57216017174NAC domain-containing protein 19
4dul_A5e-57216014171NAC domain-containing protein 19
4dul_B5e-57216014171NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00364DAPTransfer from AT3G18400Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna25163.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004300523.10.0PREDICTED: protein CUP-SHAPED COTYLEDON 1
TrEMBLA0A2P6P3P30.0A0A2P6P3P3_ROSCH; Putative transcription factor NAM family
STRINGXP_004300523.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49463356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18400.11e-101NAC domain containing protein 58