PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna25151.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family bHLH
Protein Properties Length: 346aa    MW: 38078.3 Da    PI: 4.8159
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna25151.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.23e-08235282455
                              HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                              +h+ +Er RR +iN+++  L++++P +    sk +  a +L + ++Y++sLq
  mrna25151.1-v1.0-hybrid 235 SHSLAERVRRGKINERMRCLQDIVPGC----SKTMGMAVMLDEIINYVQSLQ 282
                              8*************************9....788*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.96E-16229298IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.22E-9229286No hitNo description
Gene3DG3DSA:4.10.280.107.1E-16231292IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.9231281IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.5E-5235282IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.1E-8237287IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MAVATMTDSD PESSLGITFQ ADNSCITQKP KTQLSLELSG ELSESAIPNP MAQFTGDLKP  60
SFPFLDIQPN HIELLNQYAD QVNHLGVLDY SSLNHFQGCL PFSSDNFFGN NKGPEFPGSL  120
VENFPAGFVQ QNSSSNNINS SSNNNNNNLQ NDEASAAQCL IPAQNHEFQE SKKRIAMEMS  180
ESSSVVSNPP VPKTGIKGKN SLGRGKRVKT SSEEEDEKPR EVVHVRARRG QATDSHSLAE  240
RVRRGKINER MRCLQDIVPG CSKTMGMAVM LDEIINYVQS LQNQVEFLSM KLTAASSFHD  300
FNSETEDAME TMQRAKELEI VKIEAGYGGV VDSSFQYSST NYWSL*
Functional Description ? help Back to Top
Source Description
UniProtPositive regulator of brassinosteroid signaling. {ECO:0000269|PubMed:12454087}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna25151.1-v1.0-hybrid
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by brassinosteroid, auxin and ethylene, and repressed by abscisic acid. Insensitive to gibberellic acid. {ECO:0000269|PubMed:12454087}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004300517.10.0PREDICTED: transcription factor BEE 3
SwissprotQ8GWK72e-61BEE3_ARATH; Transcription factor BEE 3
TrEMBLA0A2P6P3P90.0A0A2P6P3P9_ROSCH; Putative transcription factor bHLH family
STRINGXP_004300517.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33603467
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73830.19e-61BR enhanced expression 3
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]