PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna25113.1-v1.0-hybrid
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family Nin-like
Protein Properties Length: 952aa    MW: 105159 Da    PI: 5.1742
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna25113.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK92.14.3e-29576626252
                   RWP-RK   2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                              ek+isle+l++yF++++kdAAk+Lgvc+T++KriCRq+GI+RWP+Rki+++
  mrna25113.1-v1.0-hybrid 576 EKSISLEVLQQYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKV 626
                              799**********************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151917.677565646IPR003035RWP-RK domain
PfamPF020423.6E-26579626IPR003035RWP-RK domain
SuperFamilySSF542774.25E-22848941No hitNo description
SMARTSM006661.3E-27856938IPR000270PB1 domain
PROSITE profilePS5174523.337856938IPR000270PB1 domain
Gene3DG3DSA:3.10.20.2401.0E-24856937No hitNo description
CDDcd064077.88E-35857937No hitNo description
PfamPF005644.8E-20857937IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0010118Biological Processstomatal movement
GO:0010167Biological Processresponse to nitrate
GO:0042128Biological Processnitrate assimilation
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009005anatomyroot
PO:0007134developmental stagesporophyte vegetative stage
Sequence ? help Back to Top
Protein Sequence    Length: 952 aa     Download sequence    Send to blast
MSDPEDDRAP SIFPKSKSLD ASSLMDFDID VPWPLDQIHF LSNPTSPLFF SPADDPCSPL  60
WAFSDVNNND KLARALPDPA QSVSDTNPVA QKRKENEDNR IVPSPFSGLE PNADGYFLIK  120
ERITRALRYL KESSDQHVLA QVWAPVWDGN RYVLTTSGQP FVLDPHDGLH QYRMVSLMYM  180
FSVDGENDGV LGLPGRVFQQ KLPEWTPNVQ YYSIKEYPRL DHAQHYNVQG TLALPVFEPS  240
GRSCIGVIEL IMTSQKINYA PEVDKICKAL EAVSLKSSEM LDHTSTQIQI RNEGRQTALT  300
EILEILTMVC ETHKLPLAQT WVPCMHRNVL AYGGGMKKSC TSFDGSCMEQ VCMSTTDVAV  360
YIVDAHMWGF REACVEHHLQ KGQGVAGRAF LSRNACFCRD ISQFRKTEYP LVHYARMFRL  420
TSSFAICLQS THTGNDDYIL EFFLPPSITD SSEQQTLLGS ILAIVKGHCQ NLKVASGIGL  480
AEEGIVEIVQ ASINEGLDSR FECIQIPRSV EPLPGSSLPN REEIVHLDPA KPQLMVDINA  540
INDERNAVHK GGQNNISVPE NKDMKKTSER KRGKTEKSIS LEVLQQYFAG SLKDAAKSLG  600
VCPTTMKRIC RQHGISRWPS RKINKVNRSL SKLKLVIESV QGGEGAFGLS PLTTSPLTGA  660
VGSNSRPFTS SQPYEVQGEK KDSPNSSSPG REGQAGIGDP DIGRGSNSSK TGSGSREAST  720
GTPTSHGSCQ GSPANGSAMA KEPFVSTMHE QFAEVDRSPE SAFRPPDEVY VPVLCSIPDA  780
LLITEPEEPS RGMQLEDAGS SKDLRNLCPL ADLTVDEQVP EVFWTDPPYP DSAPKQFIPT  840
LAYTVPHNTS LREMRSVTIK AAYKDDIIRF RISMSSCIVD LREEVAKRLK LEVGTFDMKY  900
MDDDLEWVLI ACDADLQECM EICRSSGSNM IRLSVHDILP NLGSSCESTD E*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in regulation of nitrate assimilation and in transduction of the nitrate signal. {ECO:0000269|PubMed:18826430}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00449DAPTransfer from AT4G24020Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna25113.1-v1.0-hybrid
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not regulated by the N source or by nitrate. {ECO:0000269|PubMed:18826430}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004301816.20.0PREDICTED: protein NLP6
RefseqXP_011465369.10.0PREDICTED: protein NLP6
SwissprotQ84TH90.0NLP7_ARATH; Protein NLP7
TrEMBLA0A2P6P3X30.0A0A2P6P3X3_ROSCH; Putative transcription factor Nin-like family
STRINGXP_004301816.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42573456
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24020.10.0NIN like protein 7
Publications ? help Back to Top
  1. Xu N, et al.
    The Arabidopsis NRG2 Protein Mediates Nitrate Signaling and Interacts with and Regulates Key Nitrate Regulators.
    Plant Cell, 2016. 28(2): p. 485-504
    [PMID:26744214]
  2. Karve R,Suárez-Román F,Iyer-Pascuzzi AS
    The Transcription Factor NIN-LIKE PROTEIN7 Controls Border-Like Cell Release.
    Plant Physiol., 2016. 171(3): p. 2101-11
    [PMID:27221617]
  3. Yu LH, et al.
    Overexpression of Arabidopsis NLP7 improves plant growth under both nitrogen-limiting and -sufficient conditions by enhancing nitrogen and carbon assimilation.
    Sci Rep, 2016. 6: p. 27795
    [PMID:27293103]
  4. Menz J,Li Z,Schulze WX,Ludewig U
    Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition.
    Plant J., 2016. 88(5): p. 717-734
    [PMID:27419465]
  5. Yan D, et al.
    NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis.
    Nat Commun, 2016. 7: p. 13179
    [PMID:27731416]
  6. Guan P, et al.
    Interacting TCP and NLP transcription factors control plant responses to nitrate availability.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424
    [PMID:28202720]
  7. Liu KH, et al.
    Discovery of nitrate-CPK-NLP signalling in central nutrient-growth networks.
    Nature, 2017. 545(7654): p. 311-316
    [PMID:28489820]
  8. Li Z, et al.
    The Arabidopsis CPSF30-L gene plays an essential role in nitrate signaling and regulates the nitrate transceptor gene NRT1.1.
    New Phytol., 2017. 216(4): p. 1205-1222
    [PMID:28850721]
  9. Cao H, et al.
    Overexpression of the Maize ZmNLP6 and ZmNLP8 Can Complement the Arabidopsis Nitrate Regulatory Mutant nlp7 by Restoring Nitrate Signaling and Assimilation.
    Front Plant Sci, 2017. 8: p. 1703
    [PMID:29051766]
  10. Konishi N,Okubo T,Yamaya T,Hayakawa T,Minamisawa K
    Nitrate Supply-Dependent Shifts in Communities of Root-Associated Bacteria in Arabidopsis.
    Microbes Environ., 2017. 32(4): p. 314-323
    [PMID:29187692]
  11. Karve RA,Iyer-Pascuzzi AS
    Further insights into the role of NIN-LIKE PROTEIN 7 (NLP7) in root cap cell release.
    Plant Signal Behav, 2018. 13(1): p. e1414122
    [PMID:29215953]
  12. Zhao L, et al.
    The Arabidopsis NLP7 gene regulates nitrate signaling via NRT1.1-dependent pathway in the presence of ammonium.
    Sci Rep, 2018. 8(1): p. 1487
    [PMID:29367694]