PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna25096.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family Dof
Protein Properties Length: 338aa    MW: 36881.8 Da    PI: 8.655
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna25096.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof124.92.5e-3975136263
                   zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 
                              ke+al+cprC+stntkfCyynnysl+qPryfCk+CrryWt GG+lrn+PvGgg+rknk+sss
  mrna25096.1-v1.0-hybrid  75 KESALNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTDGGSLRNIPVGGGSRKNKRSSS 136
                              67899*****************************************************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074781.0E-2768127IPR003851Zinc finger, Dof-type
PfamPF027013.1E-3377133IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.0479133IPR003851Zinc finger, Dof-type
PROSITE patternPS01361081117IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009005anatomyroot
PO:0007134developmental stagesporophyte vegetative stage
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MRVTDMAVVS GFQEKRFFSL FEENTFFYLC FASAMDTAQW PQGIVVKPIE EIVTNTCPKP  60
SSANNLERKL ARPQKESALN CPRCNSTNTK FCYYNNYSLT QPRYFCKTCR RYWTDGGSLR  120
NIPVGGGSRK NKRSSSSSSS TPTSNISNNA SKRLPDLIQP QGNQGNNQGQ DLNLGFPSNQ  180
VFAHHQIPKI DQNSDKNNNS SSTSTTTTAS HLSALELLTG LTSRGLNSFM PMPVPNSDPN  240
SNNNSGSVYT SGFPMSELMI KPTLNFSLDG LGSGYGSALQ GHHVQENSGR LLFPFEDLKQ  300
VSGSGGGIDH HQQNNKEHHH GGDSTGYWTG MLGGGSW*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna25096.1-v1.0-hybrid
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT2022862e-87KT202286.1 Prunus dulcis dof zinc finger protein (dof) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004300484.10.0PREDICTED: dof zinc finger protein DOF4.6-like
SwissprotQ8LAP87e-62DOF46_ARATH; Dof zinc finger protein DOF4.6
TrEMBLA0A2P6P3Y41e-173A0A2P6P3Y4_ROSCH; Putative transcription factor C2C2-Dof family
STRINGXP_004300484.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF67434137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64620.13e-47Dof family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]