PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | mrna25060.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 199aa MW: 22876 Da PI: 10.4384 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 58.1 | 2e-18 | 4 | 50 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 g+WTt+Ed +lvd+v+ +G g W++++++ g++R++k+c+ rw++yl mrna25060.1-v1.0-hybrid 4 GAWTTQEDNILVDYVETHGEGKWSKVSKETGLKRCGKSCRVRWLNYL 50 89*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 43.7 | 6.2e-14 | 56 | 130 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT.............................-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.............................tWktIartmgkgRtlkqcksrwqky 47 rg+ ++e+++l+ +++k+lG++ +W++I+r+++ gRt+ ++k++w+++ mrna25060.1-v1.0-hybrid 56 RGNISPEDEDLIMRLHKLLGNRsttafifryfvsslwidfvsaerktigicRWSLISRRLP-GRTDTEIKNHWNTV 130 7899*********************************************************.***********985 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 24.569 | 1 | 54 | IPR017930 | Myb domain |
SMART | SM00717 | 1.1E-13 | 2 | 52 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.1E-17 | 3 | 50 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.8E-22 | 4 | 57 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.98E-21 | 5 | 54 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.82E-11 | 5 | 50 | No hit | No description |
PROSITE profile | PS51294 | 9.156 | 55 | 135 | IPR017930 | Myb domain |
SMART | SM00717 | 1.3E-10 | 55 | 133 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.1E-11 | 56 | 130 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.0E-18 | 58 | 134 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.98E-21 | 103 | 132 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.96E-6 | 104 | 131 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 199 aa Download sequence Send to blast |
MNTGAWTTQE DNILVDYVET HGEGKWSKVS KETGLKRCGK SCRVRWLNYL RSNIKRGNIS 60 PEDEDLIMRL HKLLGNRSTT AFIFRYFVSS LWIDFVSAER KTIGICRWSL ISRRLPGRTD 120 TEIKNHWNTV IRRRKIINSK KQCISENNKR NNKPSVGSSH LLLTDSDAVH TNPARIMKVG 180 KAVHQQSHND ENLETDVD* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 2e-20 | 1 | 134 | 25 | 127 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription activator, when associated with BHLH2/EGL3/MYC146, BHLH12/MYC1, or BHLH42/TT8. Involved in the control of flavonoid late metabolism in developing siliques. Plays a key role in determining the tissue-specific activation of leucoanthocyanidin reductase (BANYULS). {ECO:0000269|PubMed:15361138}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | mrna25060.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011461168.1 | 1e-115 | PREDICTED: transcription factor TT2-like | ||||
Swissprot | Q9FJA2 | 1e-42 | TT2_ARATH; Transcription factor TT2 | ||||
TrEMBL | A0A2P6PF15 | 1e-78 | A0A2P6PF15_ROSCH; Putative transcription factor MYB-HB-like family | ||||
STRING | XP_004294552.1 | 4e-97 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF31 | 34 | 817 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G35550.1 | 4e-45 | MYB family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | mrna25060.1-v1.0-hybrid |