PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna24941.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family DBB
Protein Properties Length: 1177aa    MW: 131350 Da    PI: 6.2148
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna24941.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box19.81.6e-06279323240
                 zf-B_box   2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 
                              ++r+C+ ++   + l+C+ ++  lC +C  e H+       Ht++
  mrna24941.1-v1.0-hybrid 279 KKRVCDYCGVSMALLYCRADSAKLCFSCDKEVHSAnqlfvkHTRS 323
                              6899*****988*********************668889999876 PP
2zf-B_box26.41.5e-08323366341
                 zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 
                               + C+ ++e  +++fC + ++ lC++C  e H +      H+++p
  mrna24941.1-v1.0-hybrid 323 SQLCDACDEASASIFCSTESSVLCQNCDWERH-NlssatvHDRRP 366
                              678*****************************.558888888776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5126624.0811489IPR008913Zinc finger, CHY-type
SuperFamilySSF1612196.15E-171790No hitNo description
PfamPF054952.2E-2021101IPR008913Zinc finger, CHY-type
PROSITE profilePS5127015.51691162IPR017921Zinc finger, CTCHY-type
SuperFamilySSF1612453.01E-892129No hitNo description
PROSITE patternPS001980113124IPR0179004Fe-4S ferredoxin, iron-sulphur binding, conserved site
PfamPF145991.2E-14131178No hitNo description
Gene3DG3DSA:2.20.28.108.8E-7155178IPR004039Rubredoxin-type fold
SMARTSM003361.2E-13278325IPR000315B-box-type zinc finger
PROSITE profilePS5011910.993278325IPR000315B-box-type zinc finger
PfamPF006438.3E-6279323IPR000315B-box-type zinc finger
CDDcd000213.73E-5281325No hitNo description
PROSITE profilePS5011910.736321367IPR000315B-box-type zinc finger
PfamPF006437.6E-6323366IPR000315B-box-type zinc finger
CDDcd000212.18E-5325354No hitNo description
SMARTSM003360.6326367IPR000315B-box-type zinc finger
PfamPF030836.1E-18689774IPR004316SWEET sugar transporter
PfamPF030833.6E-20810883IPR004316SWEET sugar transporter
PfamPF030835.8E-12919985IPR004316SWEET sugar transporter
PfamPF030831.6E-2210201105IPR004316SWEET sugar transporter
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0016021Cellular Componentintegral component of membrane
GO:0008270Molecular Functionzinc ion binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009001anatomyfruit
PO:0007010developmental stagewhole plant fruit ripening stage
PO:0007027developmental stagewhole plant fruit formation stage 70% to final size
Sequence ? help Back to Top
Protein Sequence    Length: 1177 aa     Download sequence    Send to blast
MENSDSPAQK PPNFEKFAHG CDHYRRRCKI RAPCCDQIFG CRHCHNEATS SLSNPKDRHE  60
IVRQDVKQVV CSICDTEQEV AQLCANCGVQ MGEYYCDICK FFDDDTMKEQ FHCNECGICR  120
SRCPLCSKTM VNMSGYWSLL DAEIATTPMP EEYLYEVTIL CNDCVETCNV FFHILGNKDS  180
DIGANLEVSL DGLDAASSFQ DPTFLQREAE LKNDKIPPPL LPHLCLCSLP KLTQINSISK  240
IFNHFERTRE EEMNGFKEGE EEAGQQNMGA QKKQQQQKKK RVCDYCGVSM ALLYCRADSA  300
KLCFSCDKEV HSANQLFVKH TRSQLCDACD EASASIFCST ESSVLCQNCD WERHNLSSAT  360
VHDRRPVEGF TGNPGLNELL AFVGFENLDK KGLVFSEESS GGGGDGGGFD GSGLDESLGL  420
CDGFSDFLVW ETPSVVSLDD LIVSNPGHKF QAMGVPPLPK NRNAKCGRHK EEILSQLRVV  480
AKSEPNLMNE DVDLNSFMSF QSPETEQHMQ SGGFCTSFEQ LAFPAYEAQE FEANDCGKSS  540
EDFFHKGLKR SYLQDCSMVP DLNSNNDGTA SHASDGFGGQ MICEASSAYP KVPSHECTIN  600
RESALTRYKE KKKTRRYGNL IMSGSRRFVL RGGQDFITFC KVMEALKTED KLSEFLKCAL  660
KSPSNSLKCF SNSFRPTMAA PDLHTLASVF GILGTSVSFL VLLAPLLTFY EIYKRKSADG  720
FQSLPYSVAL FSAMLMLYYA YLKTNSPLLL GINTFGSIME TIYLIVYMIY APSKPRIFTA  780
KLLALFNILA YGVIVAITYQ IPNRFLQIKV VGCINVIFSV CVFAAPLGIL RLVVKTKSTE  840
YMSLPLSLCL TLCAIMWFCY GILIKDLFVA APNILGLTFG MAQNDFVTWF TGTPRSPSYQ  900
NSNSTRCQTE LLQQVMNPTF YWIYKKKSTF QFPSLPYSVA LFSAMLTLYY AFLKTNSMII  960
MAINALGIVI ETGYLVMFLI YTAPKSRIYT AKFLVIFNVV GFGVIVLSTC LIPNDVLRLQ  1020
IVGWVNIVFG VGVYASPLIV LKDVIKTKSV EFMSFSLSLS LTLCAILWFF HGLLIKDIFI  1080
AAPNVLGFIF GIVQMLMFFI YRKSTKKADL QEYSLSTTTV DVPVNSDTKV VLAVIDIHTQ  1140
IQVKTGDEKM SSDTDDLENQ LPEQGRPEDR STNTTT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5xpd_A4e-4968711149227sugar transporter
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna24941.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF70553145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47890.21e-63B-box type zinc finger protein with CCT domain