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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | mrna24916.1-v1.0-hybrid | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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| Family | FAR1 | ||||||||
| Protein Properties | Length: 121aa MW: 13842.9 Da PI: 10.1815 | ||||||||
| Description | FAR1 family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
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| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | FAR1 | 22.5 | 3.8e-07 | 57 | 106 | 3 | 49 |
FAR1 3 Yne.YAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..te 49
Yn+ Y k +GFsvr+ ++kksk +gei++++f s ++e++ ++ t+
mrna24916.1-v1.0-hybrid 57 YNDiYTKAIGFSVRMGSNKKSKVTGEIIWKQFLTSYVPRKEKQMRHmrTQ 106
5544****************************988777766666653222 PP
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| Protein Features ? help Back to Top | ||||||
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| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Pfam | PF03101 | 5.9E-5 | 56 | 111 | IPR004330 | FAR1 DNA binding domain |
| Sequence ? help Back to Top |
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| Protein Sequence Length: 121 aa Download sequence Send to blast |
MGEQSSKEPT MNAVPTKNVP VENVVSAENL IAKNVVKEPK LQLGQEFESI EVAYYYYNDI 60 YTKAIGFSVR MGSNKKSKVT GEIIWKQFLT SYVPRKEKQM RHMRTQEGNN RRPWKKGIAE 120 * |
| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | mrna24916.1-v1.0-hybrid |
| Annotation -- Protein ? help Back to Top | |||||||
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| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_024155796.1 | 7e-25 | protein FAR1-RELATED SEQUENCE 5-like | ||||
| Refseq | XP_024199801.1 | 2e-26 | protein FAR1-RELATED SEQUENCE 5-like | ||||
| STRING | XP_004309679.1 | 1e-83 | (Fragaria vesca) | ||||
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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| Hit ID | E-value | Description | ||||
| AT3G07500.1 | 2e-06 | FAR1 family protein | ||||
| Link Out ? help Back to Top | |
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| Phytozome | mrna24916.1-v1.0-hybrid |
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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