PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

mrna24915.1-v1.0-hybrid

Organism

Fragaria vesca

Taxonomic ID

57918

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

HB-other

Protein Properties

Length: 1044aa MW: 114841 Da PI: 6.7988

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
mrna24915.1-v1.0-hybrid	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	17.8	5.7e-06	80	136	1	57
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +r+R ++++ ++ ++++F + ++++e +eL++ g++ +qV+ +F +R + +k mrna24915.1-v1.0-hybrid 80 KRPRDLLNPKAIKYMQSVFSVKDAITKKESRELSALFGVSVSQVREFFNTQRSRVRK 136 799**************************************************9997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	9.912	77	137	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.5E-6	78	139	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.4E-5	79	144	IPR009057	Homeodomain-like
SMART	SM00389	2.2E-4	79	141	IPR001356	Homeobox domain
CDD	cd00086	1.32E-4	80	136	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009911	Biological Process	positive regulation of flower development
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1044 aa Download sequence Send to blast
MEDPSELEIG NSVVSFHKFV DSQRQLFHSQ IDELQKIVVT QCKLTGANPL SQEMAAGALS 60 INIGESWKCD CLVLIVLNGK RPRDLLNPKA IKYMQSVFSV KDAITKKESR ELSALFGVSV 120 SQVREFFNTQ RSRVRKIVQL SREKAIRSTE HKGLLEGVPT SFDPLVPINP LPLNTIGPSN 180 VNPLPLNTIG PSDVNLLPLN TIGPSDVNPL PLNTIGSSNS NPLPLNTVGP SNVEDAPSCS 240 TQDDTPPGLD DVDKHFVENI FNLMRKEETF SGQVKVLELI LRIQNSSVLC WFLTKGGVMI 300 LVTWLTQAAD EEQTSVILVI LKVLCHLPLS KALPAHMSAI LQSVNRLRFY RTSAIGDDPW 360 NSNGDVHENI LALPFESADR LRKSESSEPM KLLTASSDDL NKKHILGVSS SRILHIEFVI 420 VLSQPGQKTA GRSSQAARAT PVSQARPMSV DDIQKAKLRA QYMQSKYGKS ASSNENKEVK 480 AEGVNKLPVS QASTLPVVSI VPVQSSIEES KKPATLPFKE RETPDMSVQS IASFQPIAPK 540 LKTDIKEHIW EKCRRVQVPW KTPPEIKLNP EWRVGGGENG KEMEVQKNRN HREQETIYKT 600 LKEIPPNPKE PWDIEMDYDD SLTPVIPTEQ PPDSDCTETQ PSHSQEVNNA AETLAPPPQG 660 VNSVISPPTN TASSTAAPDL ELLAVLLKNP ELVFALTSGQ AANLSSEDTV KLLDMIKAGG 720 AGFAGSLNGL ASKMEEKVEV SLPSPTPSSD PGTSGWRPEA TRNAFSQQNS MQNRVSPGYS 780 SPAMVANNSV LSQLPSALTS PLPQRLLGAQ QAVPAYSPEH VHQIPHSTTV PSHLQHNYSN 840 MAVPSVWGES TSNRKPGPLY NSYNVAAERQ PNSLPPPFLP TLTHQQRHSP QPLQQQTPYS 900 ESHYSESPQY SESPYFSKPP TVKQGPPLSD SWRSGRQGLP SNYHYLENQN QYYNAPPSYG 960 GPLQQQPQLR SGPPCEGNEF VNNGGGFESW SPPEDSPARN AEYNMYGRNA YRPVERSRQT 1020 QTPGYRDYSR QGQTWPDRGR FTQ*

Sequence ? help Back to Top

Protein Sequence Length: 1044 aa Download sequence Send to blast

MEDPSELEIG NSVVSFHKFV DSQRQLFHSQ IDELQKIVVT QCKLTGANPL SQEMAAGALS  60
INIGESWKCD CLVLIVLNGK RPRDLLNPKA IKYMQSVFSV KDAITKKESR ELSALFGVSV  120
SQVREFFNTQ RSRVRKIVQL SREKAIRSTE HKGLLEGVPT SFDPLVPINP LPLNTIGPSN  180
VNPLPLNTIG PSDVNLLPLN TIGPSDVNPL PLNTIGSSNS NPLPLNTVGP SNVEDAPSCS  240
TQDDTPPGLD DVDKHFVENI FNLMRKEETF SGQVKVLELI LRIQNSSVLC WFLTKGGVMI  300
LVTWLTQAAD EEQTSVILVI LKVLCHLPLS KALPAHMSAI LQSVNRLRFY RTSAIGDDPW  360
NSNGDVHENI LALPFESADR LRKSESSEPM KLLTASSDDL NKKHILGVSS SRILHIEFVI  420
VLSQPGQKTA GRSSQAARAT PVSQARPMSV DDIQKAKLRA QYMQSKYGKS ASSNENKEVK  480
AEGVNKLPVS QASTLPVVSI VPVQSSIEES KKPATLPFKE RETPDMSVQS IASFQPIAPK  540
LKTDIKEHIW EKCRRVQVPW KTPPEIKLNP EWRVGGGENG KEMEVQKNRN HREQETIYKT  600
LKEIPPNPKE PWDIEMDYDD SLTPVIPTEQ PPDSDCTETQ PSHSQEVNNA AETLAPPPQG  660
VNSVISPPTN TASSTAAPDL ELLAVLLKNP ELVFALTSGQ AANLSSEDTV KLLDMIKAGG  720
AGFAGSLNGL ASKMEEKVEV SLPSPTPSSD PGTSGWRPEA TRNAFSQQNS MQNRVSPGYS  780
SPAMVANNSV LSQLPSALTS PLPQRLLGAQ QAVPAYSPEH VHQIPHSTTV PSHLQHNYSN  840
MAVPSVWGES TSNRKPGPLY NSYNVAAERQ PNSLPPPFLP TLTHQQRHSP QPLQQQTPYS  900
ESHYSESPQY SESPYFSKPP TVKQGPPLSD SWRSGRQGLP SNYHYLENQN QYYNAPPSYG  960
GPLQQQPQLR SGPPCEGNEF VNNGGGFESW SPPEDSPARN AEYNMYGRNA YRPVERSRQT  1020
QTPGYRDYSR QGQTWPDRGR FTQ*

Functional Description ? help Back to Top
Source	Description
UniProt	Seems to play a role in the regulation of flowering time in the autonomous flowering pathway by repressing FLOWERING LOCUS C expression. {ECO:0000269\|PubMed:10363371}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	mrna24915.1-v1.0-hybrid

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011470994.1	0.0	PREDICTED: homeobox protein LUMINIDEPENDENS
Swissprot	Q38796	0.0	LUMI_ARATH; Homeobox protein LUMINIDEPENDENS
TrEMBL	A0A2P6PWM1	0.0	A0A2P6PWM1_ROSCH; Putative transcription factor Homobox-WOX family
STRING	XP_004309678.1	0.0	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9809	29	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02560.2	1e-132	HB-other family protein

Link Out ? help Back to Top
Phytozome	mrna24915.1-v1.0-hybrid

Publications ? help Back to Top
Chakrabortee S, et al. Luminidependens (LD) is an Arabidopsis protein with prion behavior. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(21): p. 6065-70 [PMID:27114519]