PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna24904.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family WRKY
Protein Properties Length: 356aa    MW: 39182 Da    PI: 7.5648
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna24904.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY106.21.6e-33196253259
                              --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                     WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                              +Dgy+WrKYGqK vk+s++prsYYrCt+++C vkk+vers edp++v++tYeg+Hnh+
  mrna24904.1-v1.0-hybrid 196 EDGYRWRKYGQKAVKNSPYPRSYYRCTTQKCGVKKRVERSFEDPSTVITTYEGQHNHP 253
                              8********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.2E-35180255IPR003657WRKY domain
SuperFamilySSF1182906.28E-30187255IPR003657WRKY domain
PROSITE profilePS5081132.638190255IPR003657WRKY domain
SMARTSM007741.0E-39195254IPR003657WRKY domain
PfamPF031061.7E-26196253IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MSDHHHEPKD LYYHDLFQYD DHGQLNGGMI MNSPKVSGSS SPAYNNINPL QGFDVPSYLN  60
TSFTEYSSLA TAFGLSSSTS DHEVFSSIDE GNHQKPADNN LGYLRGGGGG HVSSDGEVLM  120
TPNSSVSSSS GEAGAEEGDS GNKNKKDRQK PKGSSEEGGD VHSPKKSSKI VKKKGEKKQR  180
EPRFAFMTKS EVDHLEDGYR WRKYGQKAVK NSPYPRSYYR CTTQKCGVKK RVERSFEDPS  240
TVITTYEGQH NHPIPATLRG SININAAHHH HAFFSPQSMY ASAATTTSSS GPSFPQEYLF  300
QMAQQPQMMM RNDGGGGGVY TSRNVNVPQQ YHQLSGDQYG LLQDVVPSMF FKQEP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-30186256878Probable WRKY transcription factor 4
2lex_A2e-30186256878Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00440DAPTransfer from AT4G18170Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna24904.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004293668.10.0PREDICTED: probable WRKY transcription factor 71
TrEMBLA0A2P6Q5A40.0A0A2P6Q5A4_ROSCH; Putative transcription factor WRKY family
STRINGXP_004293668.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22313483
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18170.11e-55WRKY DNA-binding protein 28