PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna24824.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | ERF | ||||||||
Protein Properties | Length: 279aa MW: 30926.6 Da PI: 8.1461 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.2 | 9.7e-19 | 29 | 79 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +++ GVr+++ +g+WvAeI+d k+ r +lg+f taeeAa+a+++a+ l+g mrna24824.1-v1.0-hybrid 29 CKFVGVRQRP-SGKWVAEIKDtT----KKIRMWLGTFETAEEAARAYDEAACLLRG 79 799*******.7*********33....36**********************99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 7.18E-33 | 29 | 86 | No hit | No description |
Pfam | PF00847 | 2.5E-13 | 29 | 79 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.8E-38 | 30 | 93 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.81E-20 | 30 | 88 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.4E-28 | 30 | 88 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.915 | 30 | 87 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.8E-8 | 31 | 42 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.8E-8 | 53 | 69 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000302 | Biological Process | response to reactive oxygen species | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0035865 | Biological Process | cellular response to potassium ion | ||||
GO:0048528 | Biological Process | post-embryonic root development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 279 aa Download sequence Send to blast |
MGLQSQKHEK GISAEKESKL KQRSSNTKCK FVGVRQRPSG KWVAEIKDTT KKIRMWLGTF 60 ETAEEAARAY DEAACLLRGS NTRTNFTSSH VASNSPLSLK IKNLLNHKKS LTQQSPSTSN 120 TMKTTPKAST RVSCTITDNN IIHSSGYYNG HCSSQLSFKT HNIEVSGDAY RPDLSNCIGN 180 NVQVPAMLHL DQPWQFLSGF DQLPNNHEGL DSTKGIATGV SHSAAEPNQL TEFEHAKVER 240 QMTSASFYAM NEVNEYLENT YDDALWDLPT LSQLFCLS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 2e-15 | 31 | 86 | 3 | 59 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00521 | DAP | Transfer from AT5G19790 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna24824.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015037 | 2e-41 | AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011461684.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor RAP2-11 | ||||
TrEMBL | A0A3S8T982 | 0.0 | A0A3S8T982_FRAAN; Transcription factor ERF40 | ||||
STRING | XP_004296200.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3341 | 30 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G19790.1 | 3e-44 | related to AP2 11 |
Link Out ? help Back to Top | |
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Phytozome | mrna24824.1-v1.0-hybrid |