PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna24821.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | MYB_related | ||||||||
Protein Properties | Length: 125aa MW: 13802.9 Da PI: 10.7268 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 59.8 | 6e-19 | 41 | 88 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+eEdell++++k+ G g+W+t +++ g+ R++k+c++rw +yl mrna24821.1-v1.0-hybrid 41 RGPWTPEEDELLANYIKKEGEGRWRTLPKRAGLLRCGKSCRLRWMNYL 88 89******************************99************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.2E-23 | 32 | 90 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 23.023 | 36 | 92 | IPR017930 | Myb domain |
SMART | SM00717 | 7.9E-14 | 40 | 90 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.4E-17 | 41 | 88 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 9.84E-23 | 42 | 117 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.83E-11 | 43 | 88 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.1E-6 | 91 | 116 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 125 aa Download sequence Send to blast |
MRNPSSSSSS GAKAKSSSAA AAGVSSSSSK TPCCVKVGLK RGPWTPEEDE LLANYIKKEG 60 EGRWRTLPKR AGLLRCGKSC RLRWMNYLRP SVKRGQIASD EEDLILRLHR LLGNRYVYHF 120 TPLH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 4e-15 | 39 | 116 | 5 | 81 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1 or BHLH042/TT8. {ECO:0000269|PubMed:15361138}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna24821.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JQ989280 | 1e-164 | JQ989280.1 Fragaria x ananassa transcription factor MYB5 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004295005.1 | 5e-77 | PREDICTED: transcription repressor MYB5 | ||||
Swissprot | Q38850 | 4e-51 | MYB5_ARATH; Transcription repressor MYB5 | ||||
TrEMBL | S5FZE3 | 4e-59 | S5FZE3_MALDO; MYB transcription factor | ||||
STRING | XP_004295005.1 | 2e-76 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3894 | 30 | 64 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13540.1 | 2e-51 | myb domain protein 5 |
Link Out ? help Back to Top | |
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Phytozome | mrna24821.1-v1.0-hybrid |
Publications ? help Back to Top | |||
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