PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna24658.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | GeBP | ||||||||
Protein Properties | Length: 398aa MW: 42903.9 Da PI: 8.3786 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 111.3 | 6.4e-35 | 170 | 261 | 1 | 97 |
DUF573 1 klfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdq 86 klfqrlws+eDei++L+G+ d+++k+g++p++d+ af+ef+kks++++vsk ql +Kirr+KkKf+++v+k + + +k+h++ mrna24658.1-v1.0-hybrid 170 KLFQRLWSDEDEIIILKGMNDYATKKGVDPYADMGAFHEFIKKSLKVDVSKIQLQDKIRRMKKKFENNVRK-----KHEPTKPHEN 250 579*******************************************************************9.....56679***** PP DUF573 87 kifelskkiWg 97 k++elskk+Wg mrna24658.1-v1.0-hybrid 251 KTYELSKKVWG 261 **********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 2.8E-30 | 172 | 261 | IPR007592 | Protein of unknown function DUF573 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0009507 | Cellular Component | chloroplast | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 398 aa Download sequence Send to blast |
MAPKRPSPLD EPPAASSSEE EQEASSEEAA SGSGSEESES ETEASEPPKT TSTAKPQPKK 60 PESAAAAKPQ SSSSGETETD SESESDGENL GNSKVHVKPI ASKPMEAVTP PPKATKPRSK 120 PAASPATAKS GTKRPNGGES ELNKDSKKAK KKGDDQEEDG VEEESSKKSK LFQRLWSDED 180 EIIILKGMND YATKKGVDPY ADMGAFHEFI KKSLKVDVSK IQLQDKIRRM KKKFENNVRK 240 KHEPTKPHEN KTYELSKKVW GGGEDLGGKT EQPKANGKAK AKSNQKGNSK TLASMKADLL 300 ASPEPSKDAE KSGAFLKRGA SGSVSSEVIG FDKGFKELGL SETIVQQGLE LIGGSKCAAL 360 KDKWNELHVA ELELFVKRTE LMRNQAQMIL EAIKSDH* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 228 | 240 | RMKKKFENNVRKK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna24658.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004309669.1 | 0.0 | PREDICTED: mediator-associated protein 1 | ||||
TrEMBL | A0A2P6Q317 | 1e-165 | A0A2P6Q317_ROSCH; Putative transcription factor GeBP family | ||||
STRING | XP_004309669.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1831 | 34 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G61730.1 | 7e-28 | DNA-binding storekeeper protein-related transcriptional regulator |
Link Out ? help Back to Top | |
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Phytozome | mrna24658.1-v1.0-hybrid |