PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | mrna24654.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 246aa MW: 26615.1 Da PI: 5.8965 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 37.5 | 4.2e-12 | 82 | 129 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++ rE+ RRdr+N++f eL ++l + + +K +Ka+iL Av+ +++L mrna24654.1-v1.0-hybrid 82 SKACREKMRRDRLNDKFLELSTILEPG---RPPKTDKAAILVDAVRMVNQL 129 5678**********************8...89***************9999 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 12.779 | 78 | 129 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.12E-9 | 81 | 134 | No hit | No description |
Pfam | PF00010 | 1.4E-9 | 82 | 129 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.4E-12 | 82 | 151 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 4.71E-13 | 83 | 153 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 7.3E-9 | 84 | 135 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 246 aa Download sequence Send to blast |
MAAASSPPQN WVFDYDLIES ISVPGGDLPS LDPPGFSWGS DSFAAPTAPS VDFDGSFGNS 60 EIMKETGSNK RVRSGSCNVS SSKACREKMR RDRLNDKFLE LSTILEPGRP PKTDKAAILV 120 DAVRMVNQLR GEAQNLKDSS ESLQEKITEL KAEKNELRDE KQRLKAEKEN LERQIKALGT 180 QPGFLPHPAA IPAPFSAPGQ VVGGKLMPFM GYPGVSGYPG VSMWQFMPQA AVDTSQDHVL 240 RPPVA* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor. Plays a role in resistance to amide-linked indole-3-acetic acid (IAA) conjugates such as IAA-Leu and IAA-Phe. May regulate gene expression in response to metal homeostasis changes. {ECO:0000269|PubMed:17028341}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | mrna24654.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004309656.1 | 0.0 | PREDICTED: transcription factor ILR3-like | ||||
Swissprot | Q9FH37 | 9e-89 | ILR3_ARATH; Transcription factor ILR3 | ||||
TrEMBL | A0A2P6Q313 | 1e-169 | A0A2P6Q313_ROSCH; Putative transcription factor bHLH family | ||||
STRING | XP_004309656.1 | 1e-180 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1602 | 34 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G54680.1 | 7e-89 | bHLH family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | mrna24654.1-v1.0-hybrid |