PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna24650.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 151aa MW: 16308.3 Da PI: 8.2018 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 32.5 | 1.1e-10 | 11 | 55 | 1 | 45 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 ++i+++ r v f++Rr+g++KKA+ L + +a+ ++s+tg+ mrna24650.1-v1.0-hybrid 11 EPISDYQSRMVAFTRRRTGLFKKAQKLEDISGSSIAIAVISETGQ 55 579****************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 7.3E-8 | 3 | 62 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 17.885 | 3 | 63 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 3.27E-14 | 4 | 70 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00120 | 1.30E-13 | 4 | 62 | No hit | No description |
PRINTS | PR00404 | 2.9E-8 | 5 | 25 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 5.8E-12 | 13 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.9E-8 | 25 | 40 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.9E-8 | 40 | 61 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 151 aa Download sequence Send to blast |
MGSGKKKIDI EPISDYQSRM VAFTRRRTGL FKKAQKLEDI SGSSIAIAVI SETGQPYLHG 60 SPSLLERALA STTTAASSST ATSTTTFEAT GSSTTTAATG TFEELKALVN TEVEACTSPE 120 EKERLKRKLL DYISRLDEKL CESDRFSTRN * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna24650.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011470988.1 | 1e-104 | PREDICTED: MADS-box transcription factor pvg4-like | ||||
TrEMBL | A0A2P6Q302 | 2e-50 | A0A2P6Q302_ROSCH; Putative transcription factor MADS-type1 family |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF16481 | 5 | 9 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G34440.1 | 2e-09 | AGAMOUS-like 29 |
Link Out ? help Back to Top | |
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Phytozome | mrna24650.1-v1.0-hybrid |