PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | mrna24577.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 366aa MW: 40673.8 Da PI: 7.577 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 38.1 | 2.7e-12 | 128 | 174 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h Er RR+++++ f++L llP++ p K +K++i+ +Av YIk L+ mrna24577.1-v1.0-hybrid 128 HIYTERERRKKMRNMFANLHALLPQL---P-SKADKSTIVDEAVTYIKRLE 174 7778*********************6...3.8****************995 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 9.95E-15 | 122 | 190 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 13.751 | 123 | 173 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.1E-9 | 128 | 174 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.5E-14 | 128 | 187 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.24E-11 | 128 | 178 | No hit | No description |
SMART | SM00353 | 1.3E-8 | 129 | 179 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd04873 | 1.27E-4 | 286 | 344 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 366 aa Download sequence Send to blast |
MFKPDSGAGA SNGVLWANQS WANLSNSTDK FLLNSNSENS AGGGDEGKDK LEKEKEIIDR 60 EDQVQPELEP EAALGKKTLA KKRGGRVSGS SFKRYNGKAI KEKGKASSEE VVKEGRRGSD 120 SEDDHELHIY TERERRKKMR NMFANLHALL PQLPSKADKS TIVDEAVTYI KRLEITLQSL 180 QQQKRERMRS LPNSTMVNYN HTPILMNSQN VVYDSREGIL PSHVSSSNLV DASTTTTTTA 240 NGFNIIPDFN PLNNSFSTNS LSPEPVVFKT WTSPNVVLNM CRNEAQISVC TPKKPGIFSQ 300 ICYILENYKL VMVTAHINSD SHRSMYMIQA QPSSASDNQL LDMFPAEEIF KQAVTEINLC 360 VVSSF* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | mrna24577.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004309748.2 | 0.0 | PREDICTED: transcription factor bHLH95 | ||||
TrEMBL | A0A2P6PMJ1 | 0.0 | A0A2P6PMJ1_ROSCH; Putative transcription factor bHLH family | ||||
STRING | XP_004309748.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4773 | 33 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G49770.1 | 4e-50 | bHLH family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | mrna24577.1-v1.0-hybrid |