PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna24516.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family MYB_related
Protein Properties Length: 310aa    MW: 34328.8 Da    PI: 5.7197
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna24516.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.22.2e-091061282346
                              -HHHHHHHHTTTS-HHHHHHHHHH CS
          Myb_DNA-binding  23 tWktIartmgkgRtlkqcksrwqk 46 
                              +W++Ia++++ gRt++++k++w++
  mrna24516.1-v1.0-hybrid 106 RWSKIAEYLP-GRTDNEIKNYWRT 128
                              6*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd001678.65E-8101128No hitNo description
SuperFamilySSF466892.11E-7105137IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.5E-11105129IPR009057Homeodomain-like
PfamPF002491.9E-7106128IPR001005SANT/Myb domain
PROSITE profilePS500906.516106130IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MIVQGKGGMN AHNFTICTRL INPQDRSNGL AHQLAGSTID QKALLWQCRS GLPGNILEPQ  60
TLLQVTRGKS GDRNPAVGEN PVTGVRCPAA GYRSPRFRPS LFMLKRWSKI AEYLPGRTDN  120
EIKNYWRTRV QKQAKHLNCD VNSKQFQDAM RYVWIPRLME RIRASPDSTT LLSGQTTATA  180
TATATSFTPT DDYSLSDQSN TAAAGSTHYL PETSATSSGS TGLQDCLNYI GEPTRTEFSE  240
LINYYPTNGQ YYSSTNYGSG CYQLDDSDFQ GSEQIESSNS WSTPGGDDSV DNLWNEENIW  300
FLQQQLNSD*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna24516.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM0346644e-39KM034664.1 Jatropha curcas clone JcMYB044 MYB family protein gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011457620.11e-112PREDICTED: transcription factor MYB108-like
TrEMBLA0A2P6RFE21e-100A0A2P6RFE2_ROSCH; Putative transcription factor MYB-HB-like family
STRINGEMJ227206e-55(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2566122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49620.11e-29myb domain protein 78