PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna24479.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family WRKY
Protein Properties Length: 498aa    MW: 55149.1 Da    PI: 9.4457
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna24479.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY92.43.4e-29243297659
                              -EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                     WRKY   6 nWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                              +WrKYGqK+ kg+++prsYYrCt+a gCpv+k+v+r aed++++++tYeg+Hnh+
  mrna24479.1-v1.0-hybrid 243 TWRKYGQKMAKGNPCPRSYYRCTMAaGCPVRKQVQRLAEDKTILITTYEGNHNHP 297
                              7***********************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1182901.12E-24242299IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.3E-28242299IPR003657WRKY domain
PfamPF031065.2E-25243297IPR003657WRKY domain
SMARTSM007746.5E-31243298IPR003657WRKY domain
PROSITE profilePS5081127.864244299IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 498 aa     Download sequence    Send to blast
MDEQGCDLKL ATGSSSDHRL VETPVKEETL LKEIKEIDFF PNRLPDPPAP GHHVMLTTLQ  60
LQVELQREHK ENQKLKSMLN QITKSYNELQ AQLRMIRLQE QLQTSAEDGY LDPKLSSLHD  120
DQSPKSSNHQ DHDKEQVLAA TDHDQVPLRR ARVSVRARSE APMCGHCPFS AVSRRRRLLS  180
FPDDSTGFQD GFSPSRTGRR QKPSWKPVLS FGKERSRRRR ETMENGRRPH FKPEYGPPLH  240
ILTWRKYGQK MAKGNPCPRS YYRCTMAAGC PVRKQVQRLA EDKTILITTY EGNHNHPLPP  300
AARSMANTTS AAAAMLVSGS TTSKEGTQPA TGLFSSLHEQ PFGSSMATFS TSSPFPTITL  360
DMTRTPISNP NPMQLIMHSS APTSFPLPLQ GYNNHPIIGH PLRLNFPHPN YAAAMQLDRS  420
HSSMVETITA AITSDPKFTT ALAAAISSSM NNVENIKTGL QGSSDDTSSL NSNGNEVYAV  480
LSGSPQHPKS CTTFSTT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A4e-182443012076WRKY transcription factor 1
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna24479.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004288357.10.0PREDICTED: probable WRKY transcription factor 47 isoform X2
RefseqXP_011467193.10.0PREDICTED: probable WRKY transcription factor 47 isoform X1
TrEMBLA0A2P6RF141e-129A0A2P6RF14_ROSCH; Putative transcription factor WRKY family
STRINGXP_004288357.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF104392541
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62300.12e-42WRKY family protein