PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna24461.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | LBD | ||||||||
Protein Properties | Length: 363aa MW: 40205.3 Da PI: 6.3162 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 124 | 7.4e-39 | 49 | 150 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 +C aCk+lrrkC +dC++ap+f ++q +++fa+vhk+FGasnv+kll +lp ++r+da+ ++ yeA+ar++dPvyG+v++il+lqq mrna24461.1-v1.0-hybrid 49 PCGACKFLRRKCINDCIFAPHFGSDQgAARFAAVHKVFGASNVSKLLLHLPLNRRHDAVVTVSYEAQARLSDPVYGCVSTILALQQ 134 7***********************9989********************************************************** PP DUF260 86 qleqlkaelallkeel 101 q+++l++ela+++++l mrna24461.1-v1.0-hybrid 135 QVASLQTELAMVQTQL 150 ***********99885 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 22.989 | 48 | 150 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 5.3E-38 | 49 | 147 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009867 | Biological Process | jasmonic acid mediated signaling pathway | ||||
GO:1900150 | Biological Process | regulation of defense response to fungus |
Sequence ? help Back to Top |
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Protein Sequence Length: 363 aa Download sequence Send to blast |
MADQPQGNHR GTSGSCLRKA TSAGTGKQQQ RTELDHYHHK TCSTVASAPC GACKFLRRKC 60 INDCIFAPHF GSDQGAARFA AVHKVFGASN VSKLLLHLPL NRRHDAVVTV SYEAQARLSD 120 PVYGCVSTIL ALQQQVASLQ TELAMVQTQL INSRFAFANA IQSSQQQQQN MALLQPACSN 180 NSSASTNLIN MSSFTSNIHD LAAETAPCSH ILKPLLLSRP TQDEEEDEHQ SQVEWHEQND 240 GEVKVVPRVD RARVWMVQAK VERPVMMRLA VDLFVDLEGA EVAPEVMWPG KADVEANWIV 300 TPLAAVEGEM GRENWRNWNR DWNQSLVRLV ERRLAGQDWV VDAVPNQEET TVPTHLLVDS 360 IE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 3e-36 | 46 | 156 | 8 | 115 | LOB family transfactor Ramosa2.1 |
5ly0_B | 3e-36 | 46 | 156 | 8 | 115 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna24461.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004309740.1 | 1e-173 | PREDICTED: LOB domain-containing protein 20 | ||||
Swissprot | Q9SRV3 | 2e-71 | LBD20_ARATH; LOB domain-containing protein 20 | ||||
TrEMBL | A0A2P6RHE8 | 1e-135 | A0A2P6RHE8_ROSCH; Putative transcription factor AS2-LOB family | ||||
STRING | XP_004309740.1 | 1e-172 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7715 | 31 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G03760.1 | 3e-73 | LOB domain-containing protein 20 |
Link Out ? help Back to Top | |
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Phytozome | mrna24461.1-v1.0-hybrid |