PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna24461.1-v1.0-hybrid
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family LBD
Protein Properties Length: 363aa    MW: 40205.3 Da    PI: 6.3162
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna24461.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601247.4e-39491501101
                   DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 
                              +C aCk+lrrkC +dC++ap+f ++q +++fa+vhk+FGasnv+kll +lp ++r+da+ ++ yeA+ar++dPvyG+v++il+lqq
  mrna24461.1-v1.0-hybrid  49 PCGACKFLRRKCINDCIFAPHFGSDQgAARFAAVHKVFGASNVSKLLLHLPLNRRHDAVVTVSYEAQARLSDPVYGCVSTILALQQ 134
                              7***********************9989********************************************************** PP

                   DUF260  86 qleqlkaelallkeel 101
                              q+++l++ela+++++l
  mrna24461.1-v1.0-hybrid 135 QVASLQTELAMVQTQL 150
                              ***********99885 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.98948150IPR004883Lateral organ boundaries, LOB
PfamPF031955.3E-3849147IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:1900150Biological Processregulation of defense response to fungus
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MADQPQGNHR GTSGSCLRKA TSAGTGKQQQ RTELDHYHHK TCSTVASAPC GACKFLRRKC  60
INDCIFAPHF GSDQGAARFA AVHKVFGASN VSKLLLHLPL NRRHDAVVTV SYEAQARLSD  120
PVYGCVSTIL ALQQQVASLQ TELAMVQTQL INSRFAFANA IQSSQQQQQN MALLQPACSN  180
NSSASTNLIN MSSFTSNIHD LAAETAPCSH ILKPLLLSRP TQDEEEDEHQ SQVEWHEQND  240
GEVKVVPRVD RARVWMVQAK VERPVMMRLA VDLFVDLEGA EVAPEVMWPG KADVEANWIV  300
TPLAAVEGEM GRENWRNWNR DWNQSLVRLV ERRLAGQDWV VDAVPNQEET TVPTHLLVDS  360
IE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A3e-36461568115LOB family transfactor Ramosa2.1
5ly0_B3e-36461568115LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna24461.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004309740.11e-173PREDICTED: LOB domain-containing protein 20
SwissprotQ9SRV32e-71LBD20_ARATH; LOB domain-containing protein 20
TrEMBLA0A2P6RHE81e-135A0A2P6RHE8_ROSCH; Putative transcription factor AS2-LOB family
STRINGXP_004309740.11e-172(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF77153146
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03760.13e-73LOB domain-containing protein 20