PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna24427.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family RAV
Protein Properties Length: 346aa    MW: 39369 Da    PI: 6.5195
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna24427.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP231.83.6e-1055101355
                      AP2   3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                              +kGV    ++g W A+I+       + +r++lg+f +++eAa a++ a+ kl++
  mrna24427.1-v1.0-hybrid  55 FKGVV-PQQNGHWGAQIYA------NhQRVWLGTFKSENEAAMAYDSAAIKLRK 101
                              78885.556899****999......44*************************97 PP
2B390.51.3e-28180272185
                              EEEE-..-HHHHTT-EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT- CS
                       B3   1 ffkvltpsdvlksgrlvlpkkfaeeh........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegD 78 
                              f+k+ltpsdv+k++rlv+pkk+a ++        +++   +++l+++d+  r W+++++y+k+s+++v+t+GW++Fvk+n+Lk++D
  mrna24427.1-v1.0-hybrid 180 FQKELTPSDVGKLNRLVIPKKYAVKYfpcisetaEENGVDDVELVFYDKVMRAWKFRYCYWKSSQSFVFTRGWNRFVKENNLKAND 265
                              99****************************998844555899******************************************** PP

                              EEEEEE- CS
                       B3  79 fvvFkld 85 
                              +++F+  
  mrna24427.1-v1.0-hybrid 266 VITFYAC 272
                              ****943 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.08E-2153112No hitNo description
PROSITE profilePS5103216.77954110IPR001471AP2/ERF domain
SMARTSM003803.3E-1854116IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.5E-1654110IPR001471AP2/ERF domain
SuperFamilySSF541713.6E-1354111IPR016177DNA-binding domain
PfamPF008471.1E-555101IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.101.4E-32177276IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.62E-28179274IPR015300DNA-binding pseudobarrel domain
CDDcd100173.31E-27179270No hitNo description
PROSITE profilePS5086313.155180293IPR003340B3 DNA binding domain
PfamPF023623.7E-26180273IPR003340B3 DNA binding domain
SMARTSM010191.7E-22180282IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MADEASGMIN SGALENNNRV AMLGETSDSN DINFELRPNK RLRHDNNDVS FAARFKGVVP  60
QQNGHWGAQI YANHQRVWLG TFKSENEAAM AYDSAAIKLR KGNDSHRNFP WTNLTIQEPD  120
FQNHLTTEEV IKMIRDGSYP SKFDAFVRSQ TQAHSEEGGK GTPNQIRVHG NGQVLCRQLF  180
QKELTPSDVG KLNRLVIPKK YAVKYFPCIS ETAEENGVDD VELVFYDKVM RAWKFRYCYW  240
KSSQSFVFTR GWNRFVKENN LKANDVITFY ACESAELVRD ESGEVTTTFS LIDVMHSEGD  300
NNKCLVQEEG KLELNLGGYS SYKLQENKAS MEQEKEVRLF GVNIK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A6e-2917926913100DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna24427.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004296303.20.0PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g50680-like
SwissprotQ9C6P51e-105RAVL2_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g50680
TrEMBLA0A3Q8TBC10.0A0A3Q8TBC1_FRAAN; Transcription factor RAV4
STRINGXP_004296303.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF50003156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50680.11e-108RAV family protein