PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna24425.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family C3H
Protein Properties Length: 301aa    MW: 31679.7 Da    PI: 9.5355
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna24425.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH29.41.4e-09105130227
                              -S---SGGGGTS--TTTTT-SS-SSS CS
                  zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                              kt+lC+ +     Ck+Gd+C+FaHg+
  mrna24425.1-v1.0-hybrid 105 KTRLCNKYNTAEGCKFGDKCHFAHGE 130
                              8***********************96 PP
2zf-CCCH33.85.9e-11267291126
                              --S---SGGGGTS--TTTTT-SS-SS CS
                  zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                              +kt+lC +f + G+C +GdrC+FaHg
  mrna24425.1-v1.0-hybrid 267 FKTKLCENFTK-GQCTFGDRCHFAHG 291
                              69*********.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.73865IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.0423866IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.33E-63964IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.3E-74063IPR000571Zinc finger, CCCH-type
PfamPF146081.84663No hitNo description
Gene3DG3DSA:4.10.1000.104.4E-14101134IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-8102134IPR000571Zinc finger, CCCH-type
SMARTSM003560.0013103130IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.244103131IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-6105130IPR000571Zinc finger, CCCH-type
SuperFamilySSF547913.51E-14169244IPR004088K Homology domain, type 1
SMARTSM003228.9E-10172242IPR004087K Homology domain
PROSITE profilePS5008413.229173237IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.102.6E-15176243IPR004088K Homology domain, type 1
CDDcd001051.34E-13177238No hitNo description
PfamPF000131.3E-10177239IPR004088K Homology domain, type 1
Gene3DG3DSA:4.10.1000.101.3E-16264296IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.63E-9265296IPR000571Zinc finger, CCCH-type
SMARTSM003569.5E-8266292IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.924266293IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-8267291IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MDFGGGRKRG RPEAASFNGN GGFKKSKPEM ESFSTGIGSK SKPCTKFFST SGCPFGEGCH  60
FLHYVPGGVK AVSQMTGSNP THPPPPRHSA APPSFPDGSS PPAVKTRLCN KYNTAEGCKF  120
GDKCHFAHGE YELGRPTAQS YDDPRGGGAM HGRMGGRNEP PPPSHGAGRF GAIANAKISV  180
DASLAGAIIG KNGLNSKQIC RVTGAKLSIR EHESDPKLRN IELEGTFDQI KDASAMVQDI  240
ILNVSSAAGP PHMRNPAMGA SIGSSNFKTK LCENFTKGQC TFGDRCHFAH GAEELRRGGM  300
*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00113ampDAPTransfer from AT3G12130Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna24425.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFQ3936045e-54FQ393604.1 Vitis vinifera clone SS0AFA25YC11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004295154.10.0PREDICTED: zinc finger CCCH domain-containing protein 14
SwissprotQ7F8R01e-112C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A2P6QMU40.0A0A2P6QMU4_ROSCH; Putative transcription factor C3H family
STRINGXP_004295154.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF146232102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.11e-52C3H family protein